Evidence map›Paper›PMID 31442478›Full record

ArticleJournal of molecular biology2019

Processive Recoding and Metazoan Evolution of Selenoprotein P: Up to 132 UGAs in Molluscs.

Janinah Baclaocos, Didac Santesmasses, Marco Mariotti, Katarzyna Bierła, Michael B Vetick, Sharon Lynch, Rob McAllen, John J Mackrill, Gary Loughran, Roderic Guigó and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. The genome and transcriptome of the snailbioRxiv : the preprint server for biology · 2023
    Article
  9. Nontriplet feature of genetic code inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Bioinformatics of Selenoproteins.Antioxidants & redox signaling · 2020
    Review
  15. Bioinformatics of Metalloproteins and Metalloproteomes.Molecules (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Janinah BaclaocosSchools of Biochemistry & Microbiology, University College Cork, Ireland.
Didac SantesmassesSchools of Biochemistry & Microbiology, University College Cork, Ireland; Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Catalonia, Spain; Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Marco MariottiSchools of Biochemistry & Microbiology, University College Cork, Ireland; Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Catalonia, Spain; Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA. Electronic address: mmariotti@bwh.harvard.edu.
Katarzyna BierłaLaboratory of Bio-Inorganic Analytical Chemistry and Environment, LCABIE- IPREM, Technopole Helioparc, 2 Av. President Angot, 64053 Pau, France.
Michael B VetickDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, New Brunswick, NJ 08854, USA.
Sharon LynchSchool of Biological, Earth & Environmental Sciences, University College Cork, Ireland.
Rob McAllenSchool of Biological, Earth & Environmental Sciences, University College Cork, Ireland.
John J MackrillSchool of Physiology, University College Cork, Ireland.
Gary LoughranSchools of Biochemistry & Microbiology, University College Cork, Ireland.
Roderic GuigóCentre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Catalonia, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Joanna SzpunarLaboratory of Bio-Inorganic Analytical Chemistry and Environment, LCABIE- IPREM, Technopole Helioparc, 2 Av. President Angot, 64053 Pau, France.
Paul R CopelandDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, New Brunswick, NJ 08854, USA.
Vadim N GladyshevDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
John F AtkinsSchools of Biochemistry & Microbiology, University College Cork, Ireland.
University College Cork · IECentre for Genomic Regulation · ESInstitut des Sciences Analytiques et de Physico-Chimie pour l'Environnement et les Matériaux · FRJohnson University · USHarvard University · USPompeu Fabra University · ES

Funding

Functional Analysis of SBP2 and Selenocysteine IncorporationR01GM077073 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI COPELAND, PAUL R · 2006 to 2022
$5.5M
Methionine sulfoxide reduction, selenium and agingR01AG021518 · NIA · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2003 to 2018
$5.0M
Functions of thioredoxin reductases and their targetsR37GM065204 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI GLADYSHEV, VADIM N. · 2011 to 2020
$4.0M
Systems level understanding of selenoprotein biosynthesisR01DK117149 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI GLADYSHEV, VADIM N. · 2018 to 2022
$2.4M
Functions of Mammalian Thioredoxin ReductasesR01GM065204 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2002 to 2009
$2.2M
NIA NIH HHS R01 AG021518NIDDK NIH HHS R01 DK117149NIGMS NIH HHS R01 GM065204NIGMS NIH HHS R01 GM077073NIGMS NIH HHS R37 GM065204
6 · The paper itself

Abstract

Selenoproteins typically contain a single selenocysteine, the 21st amino acid, encoded by a context-redefined UGA. However, human selenoprotein P (SelenoP) has a redox-functioning selenocysteine in its N-terminal domain and nine selenium transporter-functioning selenocysteines in its C-terminal domain. Here we show that diverse SelenoP genes are present across metazoa with highly variable numbers of Sec-UGAs, ranging from a single UGA in certain insects, to 9 in common spider, and up to 132 in bivalve molluscs. SelenoP genes were shaped by a dynamic evolutionary process linked to selenium usage. Gene evolution featured modular expansions of an ancestral multi-Sec domain, which led to particularly Sec-rich SelenoP proteins in many aquatic organisms. We focused on molluscs, and chose Pacific oyster Magallana gigas as experimental model. We show that oyster SelenoP mRNA with 46 UGAs is translated full-length in vivo. Ribosome profiling indicates that selenocysteine specification occurs with ∼5% efficiency at UGA1 and approaches 100% efficiency at distal 3' UGAs. We report genetic elements relevant to its expression, including a leader open reading frame and an RNA structure overlapping the initiation codon that modulates ribosome progression in a selenium-dependent manner. Unlike their mammalian counterparts, the two SECIS elements in oyster SelenoP (3'UTR recoding elements) do not show functional differentiation in vitro. Oysters can increase their tissue selenium level up to 50-fold upon supplementation, which also results in extensive changes in selenoprotein expression.

Indexed as

AnimalsBiological EvolutionCodon, TerminatorMolluscaProtein BiosynthesisSelenocysteineSelenoprotein PCodon, TerminatorSelenocysteineSelenoprotein Pdynamic redefinitionevolutionrecodingselenocysteineselenoprotein

Identifiers

PMID31442478
PMCPMC6885538
OpenAlexW2969298319

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.