Evidence map›Paper›PMID 31442247›Full record

ArticlePloS one2019

Discriminating between viable and membrane-damaged cells of the plant pathogen Xylella fastidiosa.

Anne Sicard, Marcus V Merfa, Michael Voeltz, Adam R Zeilinger, Leonardo De La Fuente, Rodrigo P P Almeida

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Preliminary transcriptomic analyses revealFrontiers in microbiology · 2025
    Article
  2. Article
  3. Article
  4. Microorganisms · 2022
    Article
  5. Article
  6. Article
  7. Quantification of ViableFrontiers in microbiology · 2021
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Anne SicardDepartment of Environmental Science, Policy and Management, University of California, Berkeley, California, United States of America.
Marcus V MerfaDepartment of Entomology and Plant Pathology, Auburn University, Auburn, Alabama, United States of America.
Michael VoeltzDepartment of Environmental Science, Policy and Management, University of California, Berkeley, California, United States of America.
Adam R ZeilingerDepartment of Environmental Science, Policy and Management, University of California, Berkeley, California, United States of America.
Leonardo De La FuenteDepartment of Entomology and Plant Pathology, Auburn University, Auburn, Alabama, United States of America.
Rodrigo P P AlmeidaDepartment of Environmental Science, Policy and Management, University of California, Berkeley, California, United States of America.ORCID 0000-0003-2888-9617
University of California, Berkeley · USAuburn University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xylella fastidiosa is a plant pathogenic bacterium with devastating consequences to several crops of economic importance across the world. While this pathogen has been studied for over a century in the United States, several aspects of its biology remain to be investigated. Determining the physiological state of bacteria is essential to understand the effects of its interactions with different biotic and abiotic factors on cell viability. Although X. fastidiosa is culturable, its slow growing nature makes this technique cumbersome to assess the physiological state of cells present in a given environment. PMA-qPCR, i.e. the use of quantitative PCR combined with the pre-treatment of cells with the dye propidium monoazide, has been successfully used in a number of studies on human pathogens to calculate the proportion of viable cells, but has less frequently been tested on plant pathogens. We found that the use of a version of PMA, PMAxx, facilitated distinguishing between viable and non-viable cells based on cell membrane integrity in vitro and in planta. Additional experiments comparing the number of culturable, viable, and total cells in planta would help further confirm our initial results. Enhancers, intended to improve the efficacy of PMAxx, were not effective and appeared to be slightly toxic to X. fastidiosa.

Indexed as

AzidesCell MembraneCell SurvivalCrops, AgriculturalHumansNicotianaPlant DiseasesPlant LeavesPropidiumReal-Time Polymerase Chain ReactionXylellaAzidesPropidiumpropidium monoazide

Identifiers

PMID31442247
PMCPMC6707623
OpenAlexW2969392484

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.