ArticleScientific reports2019
Complete chloroplast genome sequences of four Allium species: comparative and phylogenetic analyses.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.
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52 citing papers in PubMed, 98 citations in OpenAlex.
- Characterization and comparative analysis of the complete chloroplast genomes of twelve Allium species from Kazakhstan.Scientific reports · 2026Article
- Nuclear phylogenomic analysis of Allium (Amaryllidaceae) species from Kazakhstan reveals incomplete lineage sorting and gene flow.BMC plant biology · 2026Article
- Identification of plastome-derived mini barcodes by DNA metabarcoding and comparative effectiveness to decipher their strength and resolving power for taxonomic topology-based phylogenetic determination of Chenopodium quinoa.Molecular biology reports · 2026Article
- Complete Chloroplast Genome Characterization, and Phylogenetic Analyses of the Rare and Endangered PlantBiology · 2025Article
- Harnessing chloroplast SSRs to decipher genetic diversity in underutilizedFrontiers in plant science · 2025Article
- Chloroplast genomes of Caragana tibetica and Caragana turkestanica: structures and comparative analysis.BMC plant biology · 2024Article
- Characterization of the chloroplast genome of Gleditsia species and comparative analysis.Scientific reports · 2024Article
- Complete plastome sequence ofMitochondrial DNA. Part B, Resources · 2024Article
- Conservation and Global Distribution of Onion (Plants (Basel, Switzerland) · 2023Review
- Phylogeny ofPlant diversity · 2023Article
- The First Complete Chloroplast Genome ofGenes · 2023Article
- Comparative Analysis of Chloroplast Genome ofInternational journal of molecular sciences · 2023Article
- Characterization and phylogenetic analyses of ten complete plastomes of Spiraea species.BMC genomics · 2023Article
- Chloroplast genome sequence of triploid Toxicodendron vernicifluum and comparative analyses with other lacquer chloroplast genomes.BMC genomics · 2023Article
- Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae.BMC plant biology · 2023Article
- Comparative cytogenetics · 2023Review
- Phylogeny ofFrontiers in plant science · 2023Article
- A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges.Current research in food science · 2023Review
- New insights into the phylogenetic relationships among wild onions (Frontiers in plant science · 2023Article
- The complete chloroplast genomes ofMitochondrial DNA. Part B, Resources · 2023Article
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The genus Allium is one of the largest monocotyledonous genera, containing over 850 species, and most of these species are found in temperate climates of the Northern Hemisphere. Furthermore, as a large number of new Allium species continue to be identified, phylogenetic classification based on morphological characteristics and a few genetic markers will gradually exhibit extremely low discriminatory power. In this study, we present the use of complete chloroplast genome sequences in genome-scale phylogenetic studies of Allium. We sequenced and assembled four Allium chloroplast genomes and retrieved five published chloroplast genomes from GenBank. All nine chloroplast genomes were used for genomic comparison and phylogenetic inference. The chloroplast genomes, ranging from 152,387 bp to 154,482 bp in length, exhibited conservation of genomic structure, and gene organization and order. Subsequently, we observed the expansion of IRs from the basal monocot Acorus americanus to Allium, identified 814 simple sequence repeats, 131 tandem repeats, 154 dispersed repeats and 109 palindromic repeats, and found six highly variable regions. The phylogenetic relationships of the Allium species inferred from the chloroplast genomes obtained high support, indicating that chloroplast genome data will be useful for further resolution of the phylogeny of the genus Allium.
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