Evidence map›Paper›PMID 31439867›Full record

ArticleNature communications2019

PPM1D mutations silence NAPRT gene expression and confer NAMPT inhibitor sensitivity in glioma.

Nathan R Fons, Ranjini K Sundaram, Gregory A Breuer, Sen Peng, Ryan L McLean, Aravind N Kalathil, Mark S Schmidt, Diana M Carvalho, Alan Mackay, Chris Jones and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. OncogenicbioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. NAD in pathological cardiac remodeling: Metabolic regulation and beyond.Biochimica et biophysica acta. Molecular basis of disease · 2024
    Review
  9. Inhibitors of NADInternational journal of molecular sciences · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Preclinical validation of a novel therapeutic strategy for choroid plexus carcinoma.Journal of controlled release : official journal of the Controlled Release Society · 2023
    Article
  17. Article
  18. Nucleic acid drug vectors for diagnosis and treatment of brain diseases.Signal transduction and targeted therapy · 2023
    Review
  19. Targeting NADFrontiers in immunology · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Nathan R FonsDepartment of Pathology, Yale University, New Haven, CT, 06520, USA.
Ranjini K SundaramDepartment of Therapeutic Radiology, Yale University, New Haven, CT, 06520, USA.
Gregory A BreuerDepartment of Pathology, Yale University, New Haven, CT, 06520, USA.
Sen PengThe Translational Genomics Research Institute (TGen), Phoenix, AZ, 85004, USA.
Ryan L McLeanDepartment of Therapeutic Radiology, Yale University, New Haven, CT, 06520, USA.
Aravind N KalathilDepartment of Therapeutic Radiology, Yale University, New Haven, CT, 06520, USA.
Mark S SchmidtDepartment of Biochemistry, University of Iowa, Iowa City, IA, 52242, USA.ORCID http://orcid.org/0000-0003-4593-4096
Diana M CarvalhoDivisions of Molecular Pathology and Cancer Therapeutics, Institute of Cancer Research, London, UK.
Alan MackayDivisions of Molecular Pathology and Cancer Therapeutics, Institute of Cancer Research, London, UK.
Chris JonesDivisions of Molecular Pathology and Cancer Therapeutics, Institute of Cancer Research, London, UK.
Ángel M CarcabosoInstitut de Recerca Sant Joan de Deu, Barcelona, 08950, Spain.ORCID http://orcid.org/0000-0002-8485-426X
Javad NazarianChildren's National Health System, Washington, DC, 20010, USA.
Michael E BerensThe Translational Genomics Research Institute (TGen), Phoenix, AZ, 85004, USA. mberens@tgen.org.ORCID http://orcid.org/0000-0002-3382-6787
Charles BrennerDepartment of Biochemistry, University of Iowa, Iowa City, IA, 52242, USA. charles-brenner@uiowa.edu.ORCID http://orcid.org/0000-0002-4955-3226
Ranjit S BindraDepartment of Pathology, Yale University, New Haven, CT, 06520, USA. ranjit.bindra@yale.edu.ORCID http://orcid.org/0000-0002-3255-0467
Yale University · USInstitute of Cancer Research · GBTranslational Genomics Research Institute · USUniversity of Iowa · USChildren's National · USInstitut de Recerca Sant Joan de DéuYale Cancer Center · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Exploiting Mutant IDH1/2-induced Homologous Recombination Defects in CancerR01CA215453 · NCI · YALE UNIVERSITY · PI BINDRA, RANJIT · 2017 to 2021
$1.9M
Investigating DNA repair vulnerabilities in oncometabolite producing cancersF31CA260794 · NCI · YALE UNIVERSITY · PI NORONHA, KATELYN · 2021 to 2023
$122k
NCATS NIH HHS UL1 TR001863NCI NIH HHS F31 CA260794NCI NIH HHS R01 CA215453NIGMS NIH HHS T32 GM007205
6 · The paper itself

Abstract

Pediatric high-grade gliomas are among the deadliest of childhood cancers due to limited knowledge of early driving events in their gliomagenesis and the lack of effective therapies available. In this study, we investigate the oncogenic role of PPM1D, a protein phosphatase often found truncated in pediatric gliomas such as DIPG, and uncover a synthetic lethal interaction between PPM1D mutations and nicotinamide phosphoribosyltransferase (NAMPT) inhibition. Specifically, we show that mutant PPM1D drives hypermethylation of CpG islands throughout the genome and promotes epigenetic silencing of nicotinic acid phosphoribosyltransferase (NAPRT), a key gene involved in NAD biosynthesis. Notably, PPM1D mutant cells are shown to be sensitive to NAMPT inhibitors in vitro and in vivo, within both engineered isogenic astrocytes and primary patient-derived model systems, suggesting the possible application of NAMPT inhibitors for the treatment of pediatric gliomas. Overall, our results reveal a promising approach for the targeting of PPM1D mutant tumors, and define a critical link between oncogenic driver mutations and NAD metabolism, which can be exploited for tumor-specific cell killing.

Indexed as

AnimalsAntineoplastic AgentsBrain Stem NeoplasmsCell Line, TumorChildCytokinesDiffuse Intrinsic Pontine GliomaDNA MethylationEpigenetic RepressionFemaleGene Expression Regulation, NeoplasticHumansMiceNicotinamide PhosphoribosyltransferasePonsPrimary Cell CultureAntineoplastic AgentsCytokinesNicotinamide Phosphoribosyltransferasenicotinamide phosphoribosyltransferase, humanPPM1D protein, humanProtein Phosphatase 2C

Identifiers

PMID31439867
PMCPMC6706443
OpenAlexW2969666399

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.