Evidence map›Paper›PMID 31439809›Full record

ArticleRNA (New York, N.Y.)2019

The L1 stalk is required for efficient export of nascent large ribosomal subunits in yeast.

Sharmishtha Musalgaonkar, Joshua J Black, Arlen W Johnson

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sharmishtha MusalgaonkarDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USA.
Joshua J BlackDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USA.ORCID 0000-0002-7331-9579
Arlen W JohnsonDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USA.ORCID 0000-0002-4742-085X
The University of Texas at Austin · US

Funding

Eukaryotic Ribosome AssemblyR35GM127127 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Arlen W JOHNSON · 2018 to 2026
$5.6M
MRNA DEGRADATION AND TRANSLATION CONTROL IN YEASTR01GM053655 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI JOHNSON, ARLEN W · 1995 to 2017
$5.1M
NIGMS NIH HHS R01 GM053655NIGMS NIH HHS R35 GM127127
6 · The paper itself

Abstract

The ribosomal protein Rpl1 (uL1 in universal nomenclature) is essential in yeast and constitutes part of the L1 stalk which interacts with E site ligands on the ribosome. Structural studies of nascent pre-60S complexes in yeast have shown that a domain of the Crm1-dependent nuclear export adapter Nmd3, binds in the E site and interacts with Rpl1, inducing closure of the L1 stalk. Based on this observation, we decided to reinvestigate the role of the L1 stalk in nuclear export of pre-60S subunits despite previous work showing that Rpl1-deficient ribosomes are exported from the nucleus and engage in translation. Large cargoes, such as ribosomal subunits, require multiple export factors to facilitate their transport through the nuclear pore complex. Here, we show that pre-60S subunits lacking Rpl1 or truncated for the RNA of the L1 stalk are exported inefficiently. Surprisingly, this is not due to a measurable defect in the recruitment of Nmd3 but appears to result from inefficient recruitment of the Mex67-Mtr2 heterodimer.

Indexed as

Active Transport, Cell NucleusCell NucleusDimerizationRibosome Subunits, LargeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomyces cerevisiae ProteinsexportL1 stalkMex67–Mtr2ribosome

Identifiers

PMID31439809
PMCPMC6795138
OpenAlexW2969785523

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.