Evidence map›Paper›PMID 31438852›Full record

ArticleBMC microbiology2019

Comparative assessment of methicillin resistant Staphylococcus aureus diagnostic assays for use in resource-limited settings.

A Ayebare, L M Bebell, J Bazira, S Ttendo, V Katawera, D R Bangsberg, M J Siedner, P G Firth, Y Boum Ii

Abstract readComparative Study
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

A AyebareFaculty of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda. ayebarearnold12@gmail.com.ORCID 0000-0002-1755-745X
L M BebellDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA, USA.
J BaziraFaculty of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda.
S TtendoFaculty of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda.
V KataweraWorld Health Organization, Monrovia, Liberia.
D R BangsbergOregon Health & Science University-Portland State University School of Public Health, Portland, OR, USA.
M J SiednerFaculty of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda.
P G FirthMassachusetts General Hospital Department of Anesthesia, Critical Care and Pain Medicine, Boston, MA, USA.
Y Boum IiFaculty of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda. yap.boum@epicentre.msf.org.

Funding

Harvard Clinical and Translational Science CenterUL1TR001102 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$106.2M
PROGRAM FOR AIDS CLINICAL RESEARCH TRAINING (PACRT)T32AI007433 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI MARK J SIEDNER · 1992 to 2026
$11.4M
Harvard Clinical and Translational Science CenterKL2TR001100 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$8.5M
Vanderbilt-Emory-Cornell-Duke Consortium for Global Health Fellows (VECDor)R25TW009337 · FIC · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HEIMBURGER, DOUGLAS CORBETT, VERMUND, STEN H. · 2012 to 2016
$6.3M
Behavioral Aspects of Low-cost Medical Devices to Improve HIV CareK23MH099916 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI SIEDNER, MARK J · 2013 to 2017
$917k
NCATS NIH HHS KL2 TR001100NCATS NIH HHS UL1 TR001102NIAID NIH HHS T32 AI007433NIMH NIH HHS K23 MH099916World Health Organization 001
6 · The paper itself

Abstract

backgroundThe rise of methicillin-resistant Staphylococcus aureus (MRSA) is a global health concern. Paucity of data on MRSA carriage prevalence and diagnostic methods in resource-limited settings hampers efforts to define the problem and plan an appropriate response. Additionally, high variability in cost and logistical characteristics of MRSA screening methods may impede infection control efforts. We compared the performance of locally-available chromogenic agar BD CHROMagar MRSA II and two PCR-based assays (Hain GenoQuick MRSA and Cepheid Xpert SA Complete) for the detection of asymptomatic MRSA carriage in nasal swabs.

resultsDuring 2015, we enrolled 500 patients from five hospital wards at a Ugandan regional referral hospital. We found 30% prevalence of methicillin-sensitive Staphylococcus aureus (MSSA) nasal carriage, and 5.4% MRSA nasal carriage prevalence. Compared to a composite reference standard defined as a positive test result on any one of the three assays, Hain GenoQuick MRSA demonstrated the highest sensitivity (96%) followed by direct plating on CHROMagar at (70%), with the lowest sensitivity observed with Xpert SA Complete (52%). Cepheid Xpert provided the most rapid results (< 1 h) but was the most expensive (US $45-50/test). Substantially more labor was required for the Hain GenoQuick MRSA compared to Xpert SA Complete or CHROMagar tests.

conclusionMRSA nasal carriage prevalence rates were low, and high diagnostic sensitivity was achieved using Hain GenoQuick MRSA. Chromogenic media had significantly lower sensitivity, but may represent a viable local option given its lower cost compared to PCR-based assays.

Indexed as

AdultCarrier StateColony Count, MicrobialCross-Sectional StudiesDiagnostic Tests, RoutineFemaleHumansMaleMethicillin-Resistant Staphylococcus aureusNasal CavityPolymerase Chain ReactionStaphylococcal InfectionsAfricaCarriageChromogenic agarMethicillin-resistant Staphylococcus aureusMRSAPCR

Identifiers

PMID31438852
PMCPMC6704615

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.