Evidence map›Paper›PMID 31438212›Full record

ArticleStudies in health technology and informatics2019

Machine Learning Approaches for Extracting Stage from Pathology Reports in Prostate Cancer.

Raphael Lenain, Martin G Seneviratne, Selen Bozkurt, Douglas W Blayney, James D Brooks, Tina Hernandez-Boussard

Abstract read
In one paragraph

Article in Studies in health technology and informatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Raphael LenainDepartment of Medicine, Biomedical Informatics, Stanford University, Stanford, CA, USA.
Martin G SeneviratneDepartment of Medicine, Biomedical Informatics, Stanford University, Stanford, CA, USA.
Selen BozkurtDepartment of Medicine, Biomedical Informatics, Stanford University, Stanford, CA, USA.
Douglas W BlayneyDepartment of Medicine, Division of Medical Oncology, Stanford University, Stanford, CA, USA.
James D BrooksDepartment of Urology, Stanford University, Stanford, CA, USA.
Tina Hernandez-BoussardDepartment of Medicine, Biomedical Informatics, Stanford University, Stanford, CA, USA.

Funding

Utilizing Electronic Health Records to Measure and Improve Prostate Cancer CareR01CA183962 · NCI · STANFORD UNIVERSITY · PI HERNANDEZ-BOUSSARD, TINA · 2015 to 2019
$3.1M
NCI NIH HHS R01 CA183962
6 · The paper itself

Abstract

Clinical and pathological stage are defining parameters in oncology, which direct a patient's treatment options and prognosis. Pathology reports contain a wealth of staging information that is not stored in structured form in most electronic health records (EHRs). Therefore, we evaluated three supervised machine learning methods (Support Vector Machine, Decision Trees, Gradient Boosting) to classify free-text pathology reports for prostate cancer into T, N and M stage groups.

Indexed as

Machine LearningProstatic NeoplasmsElectronic Health RecordsHumansMaleNatural Language ProcessingNeoplasm StagingProstate Cancer

Identifiers

PMID31438212
PMCPMC6712988

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.