Evidence map›Paper›PMID 31437519›Full record

ArticleHuman pathology2019

Recurrent genetic alterations and biomarker expression in primary and metastatic squamous cell carcinomas of the vulva.

Deyin Xing, Yuehua Liu, Hyeon Jin Park, Inji Baek, Hung Tran, Gloria Cheang, Jorge Novo, Jessica Dillon, Andres Matoso, Emily Farmer and 8 more

Abstract read
In one paragraph

Article in Human pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. A Phase II Basket Trial of Dual Anti-CTLA-4 and Anti-PD-1 Blockade in Rare Tumors SWOG S1609: Vulvar Cancers.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Molecular Landscape of Vulvar Squamous Cell Carcinoma.International journal of molecular sciences · 2021
    Review
  11. Molecular characterization of invasive and in situ squamous neoplasia of the vulva and implications for morphologic diagnosis and outcome.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Deyin XingDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD; Department of Oncology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD. Electronic address: dxing2@jhmi.edu.
Yuehua LiuDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Hyeon Jin ParkDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York 10065, NY.
Inji BaekDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York 10065, NY.
Hung TranDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York 10065, NY.
Gloria CheangDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York 10065, NY.
Jorge NovoDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Jessica DillonDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Andres MatosoDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Emily FarmerDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Max A ChengDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Ya-Chea TsaiDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Kara LombardoDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Michael G ConnerDepartment of Pathology, The University of Alabama at Birmingham, Birmingham 35233, AL.
Russell VangDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD; Department of Gynecology and Obstetrics, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Chien-Fu HungDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD; Department of Oncology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Tzyy-Choou WuDepartment of Pathology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD; Department of Oncology, The Johns Hopkins Medical Institutions, Baltimore 21231, MD; Department of Gynecology and Obstetrics, The Johns Hopkins Medical Institutions, Baltimore 21231, MD.
Wei SongDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York 10065, NY. Electronic address: sow2005@med.cornell.edu.
Johns Hopkins University · USCornell University · USUniversity of Alabama at Birmingham · US

Funding

Treatment of HIV- and HIV+ Patients with HPV16+ CIN2/3 Using pNGLV4a-hCRTE6E7L2 DNA vaccine administered intramuscularly via electroporationP50CA098252 · NCI · JOHNS HOPKINS UNIVERSITY · PI Richard Bruce Roden · 2003 to 2026
$53.5M
NCI NIH HHS P50 CA098252
6 · The paper itself

Abstract

Using a comprehensive next-generation sequencing pipeline (143 genes), Oncomine Comprehensive v.2, we analyzed genetic alterations on a set of vulvar squamous cell carcinomas (SCCs) with emphasis on the primary and metastatic samples from the same patient, to identify amenable therapeutic targets. Clinicopathologic features were reported and genomic DNA was extracted from 42 paraffin-embedded tumor tissues of 32 cases. PD-L1 expression was evaluated in 20 tumor tissues (10 cases with paired primary and metastatic tumors). Fifteen (88%) of 17 successfully analyzed HPV-unrelated SCCs harbored TP53 mutations. 2 different TP53 mutations had been detected in the same tumor in 4 of 15 cases. Other recurrent genetic alterations in this group of tumors included CDKN2a mutations (41%), HRAS mutations (12%), NOTCH1 mutations (12%) and BIRC3 (11q22.1-22.2) amplification (12%). Six HPV-related tumors harbored PIK3CA, BAP1, PTEN, KDR, CTNNB1, and BRCA2 mutations, of which, one case also contained TP53 mutation. Six cases showed identical mutations in paired primary site and distant metastatic location and four cases displayed different mutational profiles. PD-L1 expression was seen in 6 of 10 primary tumors and all 6 paired cases showed discordant PD-L1 expression in the primary and metastatic sites. Our results further confirmed the genetic alterations that are amenable to targeted therapy, offering the potential for individualized management strategies for the treatment of these aggressive tumors with different etiology. Discordant PD-L1 expression in the primary and metastatic vulvar SCCs highlights the importance of evaluation of PD-L1 expression in different locations to avoid false negative information provided for immunotherapy.

Indexed as

AdultAgedAged, 80 and overB7-H1 AntigenBaculoviral IAP Repeat-Containing 3 ProteinBiomarkers, TumorCarcinoma, Squamous CellCyclin-Dependent Kinase Inhibitor p16FemaleHigh-Throughput Nucleotide SequencingHumansMiddle AgedMutationProto-Oncogene Proteins p21(ras)Receptor, Notch1Tumor Suppressor Protein p53B7-H1 AntigenBaculoviral IAP Repeat-Containing 3 ProteinBiomarkers, TumorCD274 protein, humanCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16HRAS protein, humanNOTCH1 protein, humanProto-Oncogene Proteins p21(ras)Receptor, Notch1TP53 protein, humanTumor Suppressor Protein p53MutationsPD-L1Squamous cell carcinomaTP53Vulva

Identifiers

PMID31437519
PMCPMC6864277
OpenAlexW2969603556

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.