Evidence map›Paper›PMID 31437443›Full record

ArticleThe Journal of investigative dermatology2020

Base Editor Correction of COL7A1 in Recessive Dystrophic Epidermolysis Bullosa Patient-Derived Fibroblasts and iPSCs.

Mark J Osborn, Gregory A Newby, Amber N McElroy, Friederike Knipping, Sarah C Nielsen, Megan J Riddle, Lily Xia, Weili Chen, Cindy R Eide, Beau R Webber and 5 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Molecular therapy. Nucleic acids · 2025
    Review
  7. Progress in skin gene therapy: From the inside and out.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  8. Nucleic Acid Therapy for the Skin.The Journal of investigative dermatology · 2025
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Emerging Gene Therapeutics for Epidermolysis Bullosa under Development.International journal of molecular sciences · 2024
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Mark J OsbornDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN. Electronic address: osbor026@umn.edu.
Gregory A NewbyMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of Harvard and MIT, Cambridge, MA; Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA; Howard Hughes Medical Institute, Harvard University, Cambridge, MA.
Amber N McElroyDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Friederike KnippingDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Sarah C NielsenDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Megan J RiddleDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Lily XiaDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Weili ChenDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Cindy R EideDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Beau R WebberDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
Hans H WandallUniversity of Copenhagen, Centre for Glycomics, Department of Cellular and Molecular Medicine, Copenhagen, Denmark.
Sally DabelsteenUniversity of Copenhagen, Centre for Glycomics, Department of Cellular and Molecular Medicine, Copenhagen, Denmark.
Bruce R BlazarDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
David R LiuMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of Harvard and MIT, Cambridge, MA; Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA; Howard Hughes Medical Institute, Harvard University, Cambridge, MA.
Jakub TolarDepartment of Pediatrics, Division of Blood and Marrow Transplant, University of Minnesota, Minneapolis, MN.
University of Minnesota · USBroad Institute · USUniversity of Copenhagen · DK

Funding

Trial Design and Biostatistical Support CoreP01CA065493 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Mark J Osborn · 1995 to 2026
$48.2M
Center for Genomic Editing and Recording: Development and Application of Next-Generation Genome and Epigenome Editing Methods to Advance the Study and Treatment of Human DiseaseRM1HG009490 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Brittany S. Adamson, Martin Joseph Ankrah Aryee · 2017 to 2026
$22.7M
Integrating Chemistry and Evolution to Illuminate Biology and Enable Novel TherapeuticsR35GM118062 · NIGMS · HARVARD UNIVERSITY · PI LIU, DAVID R · 2016 to 2025
$6.4M
T-CELL TARGETING FOR GVHDR01HL056067 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BLAZAR, BRUCE R · 1995 to 2022
$5.4M
Skin-targeted Cell Therapy for Recessive Dystrophic Epidermolysis BullosaR01AR063070 · NIAMS · UNIVERSITY OF MINNESOTA · PI Mark J Osborn, Jakub Tolar · 2013 to 2026
$4.5M
Expanding the Scope of Base EditingU01AI142756 · NIAID · BROAD INSTITUTE, INC. · PI LIU, DAVID R · 2018 to 2022
$2.1M
Howard Hughes Medical InstituteNCI NIH HHS P01 CA065493NHGRI NIH HHS RM1 HG009490NHLBI NIH HHS R01 HL056067NIAID NIH HHS U01 AI142756NIAMS NIH HHS R01 AR063070NIGMS NIH HHS R35 GM118062
6 · The paper itself

Abstract

Genome editing represents a promising strategy for the therapeutic correction of COL7A1 mutations that cause recessive dystrophic epidermolysis bullosa (RDEB). DNA cleavage followed by homology-directed repair (HDR) using an exogenous template has previously been used to correct COL7A1 mutations. HDR rates can be modest, and the double-strand DNA breaks that initiate HDR commonly result in accompanying undesired insertions and deletions (indels). To overcome these limitations, we applied an A•T→G•C adenine base editor (ABE) to correct two different COL7A1 mutations in primary fibroblasts derived from RDEB patients. ABE enabled higher COL7A1 correction efficiencies than previously reported HDR efforts. Moreover, ABE obviated the need for a repair template, and minimal indels or editing at off-target sites was detected. Base editing restored the endogenous type VII collagen expression and function in vitro. We also treated induced pluripotent stem cells (iPSCs) derived from RDEB fibroblasts with ABE. The edited iPSCs were differentiated into mesenchymal stromal cells, a cell population with therapeutic potential for RDEB. In a mouse teratoma model, the skin derived from ABE-treated iPSCs showed the proper deposition of C7 at the dermal-epidermal junction in vivo. These demonstrate that base editing provides an efficient and precise genome editing method for autologous cell engineering for RDEB.

Indexed as

Mesenchymal Stem Cell TransplantationTargeted Gene RepairAnimalsCell DifferentiationCell EngineeringCells, CulturedCollagen Type VIIDisease Models, AnimalEpidermolysis Bullosa DystrophicaFibroblastsGenes, RecessiveHumansInduced Pluripotent Stem CellsMesenchymal Stem CellsMiceMutationCOL7A1 protein, humanCollagen Type VII

Identifiers

PMID31437443
PMCPMC6983342
OpenAlexW2969708937

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.