Evidence map›Paper›PMID 31437202›Full record

ArticlePloS one2019

Gene expression of Porphyromonas gingivalis ATCC 33277 when growing in an in vitro multispecies biofilm.

Patricia Romero-Lastra, María C Sánchez, Arancha Llama-Palacios, Elena Figuero, David Herrera, Mariano Sanz

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Patricia Romero-LastraLaboratory of Dental Research, Faculty of Odontology, Complutense University of Madrid, Madrid, Spain.ORCID 0000-0003-4421-7845
María C SánchezLaboratory of Dental Research, Faculty of Odontology, Complutense University of Madrid, Madrid, Spain.
Arancha Llama-PalaciosLaboratory of Dental Research, Faculty of Odontology, Complutense University of Madrid, Madrid, Spain.
Elena FigueroETEP Research Group, Faculty of Odontology, Complutense University of Madrid, Madrid, Spain.
David HerreraETEP Research Group, Faculty of Odontology, Complutense University of Madrid, Madrid, Spain.
Mariano SanzETEP Research Group, Faculty of Odontology, Complutense University of Madrid, Madrid, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

objectivePorphyromonas gingivalis, an oral microorganism residing in the subgingival biofilm, may exert diverse pathogenicity depending on the presence of specific virulence factors, but its gene expression has not been completely established. This investigation aims to compare the transcriptomic profile of this pathogen when growing within an in vitro multispecies biofilm or in a planktonic state. MATERIALS AND

methodsP. gingivalis ATCC 33277 was grown in anaerobiosis within multi-well culture plates at 37°C under two conditions: (a) planktonic samples (no hydroxyapatite discs) or (b) within a multispecies-biofilm containing Streptococcus oralis, Actinomyces naeslundii, Veillonella parvula, Fusobacterium nucleatum and Aggregatibacter actinomycetemcomitans deposited on hydroxyapatite discs. Scanning Electron Microscopy (SEM) and Confocal Laser Scanning Microscopy (CLSM) combined with Fluorescence In Situ Hybridization (FISH) were used to verify the formation of the biofilm and the presence of P. gingivalis. Total RNA was extracted from both the multispecies biofilm and planktonic samples, then purified and, with the use of a microarray, its differential gene expression was analyzed. A linear model was used for determining the differentially expressed genes using a filtering criterion of two-fold change (up or down) and a significance p-value of <0.05. Differential expression was confirmed by Reverse Transcription-quantitative Polymerase Chain Reaction (RT-qPCR).

resultsSEM verified the development of the multispecies biofilm and FISH confirmed the incorporation of P. gingivalis. The microarray demonstrated that, when growing within the multispecies biofilm, 19.1% of P. gingivalis genes were significantly and differentially expressed (165 genes were up-regulated and 200 down-regulated), compared with planktonic growth. These genes were mainly involved in functions related to the oxidative stress, cell envelope, transposons and metabolism. The results of the microarray were confirmed by RT-qPCR.

conclusionSignificant transcriptional changes occurred in P. gingivalis when growing in a multispecies biofilm compared to planktonic state.

Indexed as

Gene Expression Regulation, BacterialGenes, BacterialTranscriptomeActinomycesAggregatibacter actinomycetemcomitansAnaerobiosisBiofilmsCulture MediaDurapatiteFusobacterium nucleatumHumansPlanktonPorphyromonas gingivalisRNA, BacterialStreptococcus oralisVeillonellaCulture MediaDurapatiteRNA, Bacterial

Identifiers

PMID31437202
PMCPMC6706054

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.