Evidence map›Paper›PMID 31436531›Full record

ArticleeLife2019

Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis.

Jinsheng Zhu, Kelvin Lau, Robert Puschmann, Robert K Harmel, Youjun Zhang, Verena Pries, Philipp Gaugler, Larissa Broger, Amit K Dutta, Henning J Jessen and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
24.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 177 citations in OpenAlex.

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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Jinsheng ZhuStructural Plant Biology Laboratory, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-8131-1876
Kelvin LauStructural Plant Biology Laboratory, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.
Robert PuschmannLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID 0000-0002-6443-2326
Robert K HarmelLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.
Youjun ZhangMax-Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Verena PriesInstitute of Crop Science and Resource Conservation, Department of Plant Nutrition, University of Bonn, Bonn, Germany.
Philipp GauglerInstitute of Crop Science and Resource Conservation, Department of Plant Nutrition, University of Bonn, Bonn, Germany.
Larissa BrogerStructural Plant Biology Laboratory, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.
Amit K DuttaInstitute of Organic Chemistry, Freiburg im Breisgau, Germany.
Henning J JessenInstitute of Organic Chemistry, Freiburg im Breisgau, Germany.
Gabriel SchaafInstitute of Crop Science and Resource Conservation, Department of Plant Nutrition, University of Bonn, Bonn, Germany.
Alisdair R FernieMax-Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Ludwig A HothornInstitute of Biostatistics, Leibniz University, Hannover, Germany.
Dorothea FiedlerLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.
Michael HothornStructural Plant Biology Laboratory, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-3597-5698
University of Geneva · CHHumboldt-Universität zu Berlin · DEUniversity of Bonn · DECenter of Plant Systems Biology and Biotechnology · BGLeibniz University Hannover · DEMax Planck Institute of Molecular Plant Physiology · DE

Funding

Deutsche Forschungsgemeinschaft SCHA 1274/4-1European Molecular Biology Organization ALTF 493-2015H2020 European Research Council 310856Horizon 2020 Framework Programme PlantaSYSTHoward Hughes Medical Institute 55008733Leibniz-Gemeinschaft SAW-2017-FMP-1Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung CRSII5_170925
6 · The paper itself

Abstract

Many eukaryotic proteins regulating phosphate (Pi) homeostasis contain SPX domains that are receptors for inositol pyrophosphates (PP-InsP), suggesting that PP-InsPs may regulate Pi homeostasis. Here we report that deletion of two diphosphoinositol pentakisphosphate kinases VIH1/2 impairs plant growth and leads to constitutive Pi starvation responses. Deletion of phosphate starvation response transcription factors partially rescues vih1 vih2 mutant phenotypes, placing diphosphoinositol pentakisphosphate kinases in plant Pi signal transduction cascades. VIH1/2 are bifunctional enzymes able to generate and break-down PP-InsPs. Mutations in the kinase active site lead to increased Pi levels and constitutive Pi starvation responses. ATP levels change significantly in different Pi growth conditions. ATP-Mg2+ concentrations shift the relative kinase and phosphatase activities of diphosphoinositol pentakisphosphate kinases in vitro. Pi inhibits the phosphatase activity of the enzyme. Thus, VIH1 and VIH2 relay changes in cellular ATP and Pi concentrations to changes in PP-InsP levels, allowing plants to maintain sufficient Pi levels.

Indexed as

Adenosine TriphosphateArabidopsisDiphosphatesGene DeletionHomeostasisPhosphotransferases (Phosphate Group Acceptor)Adenosine TriphosphateDiphosphatesdiphosphoinositol pentakisphosphate kinasePhosphotransferases (Phosphate Group Acceptor)A. thalianabiochemistrychemical biologyhumaninositol pyrophosphateskinasephosphatasephosphate homeostasisphosphate starvationplant biologyplant nutritionS. cerevisiae

Identifiers

PMID31436531
PMCPMC6731061
OpenAlexW2969511236

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.