Evidence map›Paper›PMID 31435019›Full record

ArticleNature2019

Conserved cell types with divergent features in human versus mouse cortex.

Rebecca D Hodge, Trygve E Bakken, Jeremy A Miller, Kimberly A Smith, Eliza R Barkan, Lucas T Graybuck, Jennie L Close, Brian Long, Nelson Johansen, Osnat Penn and 54 more

Abstract readComparative Study
In one paragraph

Article in Nature, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,124 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,124citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,124 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Glial cells in neuropathic pain.Physiological reviews · 2026
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  20. Regional cerebral blood flow correlates with transcriptional and cellular signatures in tinnitus.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2026
    Article

1,064 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

64 authors.

Rebecca D Hodge *Allen Institute for Brain Science, Seattle, WA, USA.
Trygve E Bakken *Allen Institute for Brain Science, Seattle, WA, USA.
Jeremy A MillerAllen Institute for Brain Science, Seattle, WA, USA.
Kimberly A SmithAllen Institute for Brain Science, Seattle, WA, USA.
Eliza R BarkanAllen Institute for Brain Science, Seattle, WA, USA.
Lucas T GraybuckAllen Institute for Brain Science, Seattle, WA, USA.
Jennie L CloseAllen Institute for Brain Science, Seattle, WA, USA.
Brian LongAllen Institute for Brain Science, Seattle, WA, USA.
Nelson JohansenDepartment of Molecular and Cellular Biology, University of California, Davis, Davis, CA, USA.
Osnat PennAllen Institute for Brain Science, Seattle, WA, USA.
Zizhen YaoAllen Institute for Brain Science, Seattle, WA, USA.
Jeroen EggermontDepartment of Radiology, Leiden University Medical Center, Leiden, The Netherlands.
Thomas HölltDepartment of Radiology, Leiden University Medical Center, Leiden, The Netherlands.
Boaz P LeviAllen Institute for Brain Science, Seattle, WA, USA.
Soraya I ShehataAllen Institute for Brain Science, Seattle, WA, USA.
Brian AevermannJ. Craig Venter Institute, La Jolla, CA, USA.
Allison BellerDepartment of Pathology, University of Washington, Seattle, WA, USA.
Darren BertagnolliAllen Institute for Brain Science, Seattle, WA, USA.
Krissy BrounerAllen Institute for Brain Science, Seattle, WA, USA.
Tamara CasperAllen Institute for Brain Science, Seattle, WA, USA.
Charles CobbsThe Ben and Catherine Ivy Center for Advanced Brain Tumor Treatment, Swedish Neuroscience Institute, Seattle, WA, USA.
Rachel DalleyAllen Institute for Brain Science, Seattle, WA, USA.
Nick DeeAllen Institute for Brain Science, Seattle, WA, USA.
Song-Lin DingAllen Institute for Brain Science, Seattle, WA, USA.
Richard G EllenbogenDepartment of Neurological Surgery, University of Washington School of Medicine, Seattle, WA, USA.
Olivia FongAllen Institute for Brain Science, Seattle, WA, USA.
Emma GarrenAllen Institute for Brain Science, Seattle, WA, USA.
Jeff GoldyAllen Institute for Brain Science, Seattle, WA, USA.
Ryder P GwinnEpilepsy Surgery and Functional Neurosurgery, Swedish Neuroscience Institute, Seattle, WA, USA.
Daniel HirschsteinAllen Institute for Brain Science, Seattle, WA, USA.
C Dirk KeeneDepartment of Pathology, University of Washington, Seattle, WA, USA.
Mohamed KeshkJ. Craig Venter Institute, La Jolla, CA, USA.
Andrew L KoDepartment of Neurological Surgery, University of Washington School of Medicine, Seattle, WA, USA.
Kanan LathiaAllen Institute for Brain Science, Seattle, WA, USA.
Ahmed MahfouzDepartment of Radiology, Leiden University Medical Center, Leiden, The Netherlands.
Zoe MaltzerAllen Institute for Brain Science, Seattle, WA, USA.
Medea McGrawAllen Institute for Brain Science, Seattle, WA, USA.
Thuc Nghi NguyenAllen Institute for Brain Science, Seattle, WA, USA.
Julie NyhusAllen Institute for Brain Science, Seattle, WA, USA.
Jeffrey G OjemannDepartment of Neurological Surgery, University of Washington School of Medicine, Seattle, WA, USA.
Aaron OldreAllen Institute for Brain Science, Seattle, WA, USA.
Sheana ParryAllen Institute for Brain Science, Seattle, WA, USA.
Shannon ReynoldsAllen Institute for Brain Science, Seattle, WA, USA.
Christine RimorinAllen Institute for Brain Science, Seattle, WA, USA.
Nadiya V ShapovalovaAllen Institute for Brain Science, Seattle, WA, USA.
Saroja SomasundaramAllen Institute for Brain Science, Seattle, WA, USA.
Aaron SzaferAllen Institute for Brain Science, Seattle, WA, USA.
Elliot R ThomsenAllen Institute for Brain Science, Seattle, WA, USA.
Michael TieuAllen Institute for Brain Science, Seattle, WA, USA.
Gerald QuonDepartment of Molecular and Cellular Biology, University of California, Davis, Davis, CA, USA.
Richard H ScheuermannJ. Craig Venter Institute, La Jolla, CA, USA.
Rafael YusteNeurotechnology Center, Department of Biological Sciences, Columbia University, New York, NY, USA.
Susan M SunkinAllen Institute for Brain Science, Seattle, WA, USA.
Boudewijn LelieveldtDepartment of Radiology, Leiden University Medical Center, Leiden, The Netherlands.
David FengAllen Institute for Brain Science, Seattle, WA, USA.
Lydia NgAllen Institute for Brain Science, Seattle, WA, USA.
Amy BernardAllen Institute for Brain Science, Seattle, WA, USA.
Michael HawrylyczAllen Institute for Brain Science, Seattle, WA, USA.
John W PhillipsAllen Institute for Brain Science, Seattle, WA, USA.
Bosiljka TasicAllen Institute for Brain Science, Seattle, WA, USA.
Hongkui ZengAllen Institute for Brain Science, Seattle, WA, USA.
Allan R JonesAllen Institute for Brain Science, Seattle, WA, USA.
Christof KochAllen Institute for Brain Science, Seattle, WA, USA.
Ed S LeinAllen Institute for Brain Science, Seattle, WA, USA. edl@alleninstitute.org.

Funding

Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2017 to 2021
$64.7M
A multimodal atlas of human brain cell typesU01MH114812 · NIMH · ALLEN INSTITUTE · PI LEIN, ED · 2017 to 2021
$19.2M
Medical Scientist Training ProgramT32GM008497 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI WILSON, CARA C. · 1993 to 2022
$15.2M
Establishing a Comprehensive and Standardized Cell Type Characterization PlatformU01MH105982 · NIMH · ALLEN INSTITUTE · PI ANDERSON, DAVID J, ZENG, HONGKUI · 2014 to 2016
$5.1M
NIGMS NIH HHS T32 GM008497NIMH NIH HHS U01 MH105982NIMH NIH HHS U01 MH114812NIMH NIH HHS U19 MH114830
6 · The paper itself

Abstract

Elucidating the cellular architecture of the human cerebral cortex is central to understanding our cognitive abilities and susceptibility to disease. Here we used single-nucleus RNA-sequencing analysis to perform a comprehensive study of cell types in the middle temporal gyrus of human cortex. We identified a highly diverse set of excitatory and inhibitory neuron types that are mostly sparse, with excitatory types being less layer-restricted than expected. Comparison to similar mouse cortex single-cell RNA-sequencing datasets revealed a surprisingly well-conserved cellular architecture that enables matching of homologous types and predictions of properties of human cell types. Despite this general conservation, we also found extensive differences between homologous human and mouse cell types, including marked alterations in proportions, laminar distributions, gene expression and morphology. These species-specific features emphasize the importance of directly studying human brain.

Indexed as

Biological EvolutionAdolescentAdultAgedAnimalsAstrocytesCerebral CortexFemaleHumansMaleMiceMiddle AgedNeural InhibitionNeuronsPrincipal Component AnalysisRNA-Seq

Identifiers

PMID31435019
PMCPMC6919571

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.