Evidence map›Paper›PMID 31434954›Full record

ArticleScientific reports2019

Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates.

Paulo L Onuchic, Anthony N Milin, Ibraheem Alshareedah, Ashok A Deniz, Priya R Banerjee

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Article
  2. Article
  3. MgChem & bio engineering · 2026
    Article
  4. Article
  5. Article
  6. Emergent Chemical Reactivity and Complexity of RNA Condensates.Angewandte Chemie (International ed. in English) · 2025
    Article
  7. Molecular drivers of RNA phase separation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Driving forces of RNA condensation revealed through coarse-grained modeling with explicit MgProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Stabilization of Condensate Interfaces Using Dynamic Protein Insertion.Journal of the American Chemical Society · 2025
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Paulo L OnuchicDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, 92037, USA.ORCID http://orcid.org/0000-0002-7595-1690
Anthony N MilinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, 92037, USA.
Ibraheem AlshareedahDepartment of Physics, University at Buffalo, State University of New York, Buffalo, NY, 14260, USA.
Ashok A DenizDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, 92037, USA. deniz@scripps.edu.
Priya R BanerjeeDepartment of Physics, University at Buffalo, State University of New York, Buffalo, NY, 14260, USA. prbanerj@buffalo.edu.ORCID http://orcid.org/0000-0002-6169-1461

Funding

Single Molecule Studies of Protein Folding MechanismsR01GM066833 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DENIZ, ASHOK A · 2003 to 2017
$5.2M
Biophysics of Protein Disorder and Complexity, Single Molecules to MesoscalesR35GM130375 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DENIZ, ASHOK A · 2019 to 2023
$2.4M
The Molecular Basis of Liquid-like Structure of the NucleolusR01GM115634 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI KRIWACKI, RICHARD W · 2015 to 2018
$1.8M
NIGMS NIH HHS R01 GM066833NIGMS NIH HHS R01 GM115634NIGMS NIH HHS R35 GM130375
6 · The paper itself

Abstract

Liquid-liquid phase separation (LLPS) of RNA-protein complexes plays a major role in the cellular function of membraneless organelles (MLOs). MLOs are sensitive to changes in cellular conditions, such as fluctuations in cytoplasmic ion concentrations. To investigate the effect of these changes on MLOs, we studied the influence of divalent cations on the physical and chemical properties of RNA coacervates. Using a model system comprised of an arginine-rich peptide and RNA, we predicted and observed that variations in signaling cations exert interaction-dependent effects on RNA LLPS. Changing the ionic environment has opposing effects on the propensity for heterotypic peptide-RNA and homotypic RNA LLPS, which results in a switch between coacervate types. Furthermore, divalent ion variations continuously tune the microenvironments and fluid properties of heterotypic and homotypic droplets. Our results may provide a general mechanism for modulating the biochemical environment of RNA coacervates in a cellular context.

Indexed as

Amino Acid SequenceArginineCations, DivalentFluorescence Recovery After PhotobleachingMagnesiumMicroscopy, FluorescenceNephelometry and TurbidimetryPeptidesPoly UProtein BindingRNAArginineCations, DivalentMagnesiumPeptidesPoly URNA

Identifiers

PMID31434954
PMCPMC6704260

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.