Evidence map›Paper›PMID 31433971›Full record

ArticleImmunity2019

The Immune Landscape of Cancer.

Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Tai-Hsien Ou Yang, Eduard Porta-Pardo, Galen F Gao, Christopher L Plaisier, James A Eddy and 48 more

Abstract readPublished Erratum
PubMed Publisher
In one paragraph

Article in Immunity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 322 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
322citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

322 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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262 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

58 authors.

Vésteinn ThorssonInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address: vesteinn.thorsson@systemsbiology.org.
David L GibbsInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA.
Scott D BrownCanada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada.
Denise WolfUniversity of California, San Francisco, Box 0808, 2340 Sutter Street, S433, San Francisco, CA 94115, USA.
Dante S BortoneLineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA.
Tai-Hsien Ou YangDepartment of Systems Biology and Department of Electrical Engineering, Columbia University, New York, NY 10027, USA.
Eduard Porta-PardoBarcelona Supercomputing Centre, c/Jordi Girona, 29, 08034 Barcelona, Spain; SBP Medical Discovery Institute, La Jolla, CA 92037, USA.
Galen F GaoThe Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA.
Christopher L PlaisierInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA.
James A EddySage Bionetworks, 2901 Third Ave, Suite 330, Seattle, WA 98121, USA.
Elad ZivDepartment of Medicine, Institute for Human Genetics, Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, 1450 3rd St, San Francisco, CA 94143, USA.
Aedin C CulhaneDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Evan O PaullIrving Cancer Research Center, Room 913,1130 St. Nicholas Avenue, New York, NY 10032, USA.
I K Ashok SivakumarDepartment of Computer Science, Institute for Computational Medicine; Johns Hopkins University, Baltimore, MD 21218, USA.
Andrew J GentlesDepartments of Medicine and Biomedical Data Science, Stanford University, Stanford, CA 94305, USA.
Raunaq MalhotraSeven Bridges Genomics, Cambridge, MA 02142, USA.
Farshad FarshidfarDepartment of Oncology, University of Calgary, Calgary, AB T2N 4N1, Canada.
Antonio ColapricoUniversite libre de Bruxelles (ULB), Computer Science Department, Faculty of Sciences, Boulevard du Triomphe - CP212, 1050 Bruxelles, Belgium.
Joel S ParkerLineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA.
Lisle E MoseLineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA.
Nam Sy VoDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Jianfang LiuChan Soon-Shiong Institute of Molecular Medicine at Windber, Windber, PA 15963, USA.
Yuexin LiuDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Janet RaderMedical College of Wisconsin, 9200 Wisconsin Avenue, Milwaukee, WI 53226 USA.
Varsha DhankaniInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA.
Sheila M ReynoldsInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA.
Reanne BowlbyCanada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada.
Andrea CalifanoIrving Cancer Research Center, Room 913,1130 St. Nicholas Avenue, New York, NY 10032, USA.
Andrew D CherniackThe Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA.
Dimitris AnastassiouDepartment of Systems Biology and Department of Electrical Engineering, Columbia University, New York, NY 10027, USA.
Davide BedognettiDivision of Translational Medicine, Research Branch, Sidra Medical and Research Center, PO Box 26999, Doha, Qatar.
Younes MokrabDivision of Translational Medicine, Research Branch, Sidra Medical and Research Center, PO Box 26999, Doha, Qatar.
Aaron M NewmanInstitute for Stem Cell Biology and Regenerative Medicine and Department of Biomedical Data Science, Stanford University, Stanford, CA 94305, USA.
Arvind RaoDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Ken ChenDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Alexander KrasnitzSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Hai HuChan Soon-Shiong Institute of Molecular Medicine at Windber, Windber, PA 15963, USA.
Tathiane M MaltaDepartment of Neurosurgery, Henry Ford Hospital, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of São Paulo, São Paulo, Brazil.
Houtan NoushmehrDepartment of Neurosurgery, Henry Ford Hospital, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of São Paulo, São Paulo, Brazil.
Chandra Sekhar PedamalluDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Susan BullmanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Akinyemi I OjesinaUniversity of Alabama at Birmingham, Birmingham, AL 35294, USA.
Andrew LambSage Bionetworks, 2901 Third Ave, Suite 330, Seattle, WA 98121, USA.
Wanding ZhouCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA.
Hui ShenCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA.
Toni K ChoueiriDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
John N WeinsteinDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Justin GuinneySage Bionetworks, 2901 Third Ave, Suite 330, Seattle, WA 98121, USA.
Joel SaltzDepartment of Biomedical Informatics, Stony Brook Medicine, 100 Nicolls Rd, Stony Brook, NY 11794, USA.
Robert A HoltCanada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada.
Charles S RabkinDivision of Cancer Epidemiology and Genetics, National Cancer Institute, 9609 Medical Center Dr., Bethesda, MD 20892, USA.
Cancer Genome Atlas Research Network
Alexander J LazarDepartments of Pathology, Genomics Medicine and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd-Unit 85, Houston, TX 77030, USA.
Jonathan S SerodyDepartment of Medicine and Microbiology and Lineberger Comprehensive Cancer Center, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA.
Elizabeth G DemiccoMount Sinai Hospital, Department of Pathology and Laboratory Medicine, 600 University Ave., Toronto, ON M5G 1X5, Canada.
Mary L DisisUW Medicine Cancer Vaccine Institute, 850 Republican Street, Brotman Building, 2nd Floor, Room 221, Box 358050, University of Washington, Seattle, WA 98109-4714, USA.
Benjamin G VincentLineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA. Electronic address: benjamin.vincent@unchealth.unc.edu.
Ilya ShmulevichInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address: ilya.shmulevich@systemsbiology.org.

Funding

Integrative Cancer Epigenomic Data Analysis Center (ICE-DAC)U24CA210969 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI LAIRD, PETER W · 2016 to 2020
$2.5M
Targeted proteomics to aid in the management of patients with stage IA lung adenoR21CA223335 · NCI · RUSH UNIVERSITY MEDICAL CENTER · PI BORGIA, JEFFREY A. · 2018 to 2019
$369k
NCI NIH HHS R21 CA223335NCI NIH HHS U24 CA210969
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.