Evidence map›Paper›PMID 31433817›Full record

ArticlePLoS computational biology2019

Variation in plastic responses to light results from selection in different competitive environments-A game theoretical approach using virtual plants.

Franca J Bongers, Jacob C Douma, Yoh Iwasa, Ronald Pierik, Jochem B Evers, Niels P R Anten

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Breeding in winter wheat (Frontiers in plant science · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Franca J BongersCentre for Crop Systems Analysis, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0001-9517-4932
Jacob C DoumaCentre for Crop Systems Analysis, Wageningen University, Wageningen, The Netherlands.
Yoh IwasaTheoretical Biology, Kyushu University, Fukuoka, Japan.
Ronald PierikPlant Ecophysiology, Utrecht University, Utrecht, the Netherlands.ORCID 0000-0002-5320-6817
Jochem B EversCentre for Crop Systems Analysis, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0002-3956-0190
Niels P R AntenCentre for Crop Systems Analysis, Wageningen University, Wageningen, The Netherlands.
Wageningen University & Research · NLUtrecht University · NLKyushu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phenotypic plasticity is a vital strategy for plants to deal with changing conditions by inducing phenotypes favourable in different environments. Understanding how natural selection acts on variation in phenotypic plasticity in plants is therefore a central question in ecology, but is often ignored in modelling studies. Here we present a new modelling approach that allows for the analysis of selection for variation in phenotypic plasticity as a response strategy. We assess selection for shade avoidance strategies of Arabidopsis thaliana in response to future neighbour shading signalled through a decrease in red:far-red (R:FR) ratio. For this, we used a spatially explicit 3D virtual plant model that simulates individual Arabidopsis plants competing for light in different planting densities. Plant structure and growth were determined by the organ-specific interactions with the light environment created by the vegetation structure itself. Shade avoidance plastic responses were defined by a plastic response curve relating petiole elongation and lamina growth to R:FR perceived locally. Different plasticity strategies were represented by different shapes of the response curve that expressed different levels of R:FR sensitivity. Our analyses show that the shape of the selected shade avoidance strategy varies with planting density. At higher planting densities, more sensitive response curves are selected for than at lower densities. In addition, the balance between lamina and petiole responses influences the sensitivity of the response curves selected for. Combining computational virtual plant modelling with a game theoretical analysis represents a new step towards analysing how natural selection could have acted upon variation in shade avoidance as a response strategy, which can be linked to genetic variation and underlying physiological processes.

Indexed as

Models, BiologicalAdaptation, PhysiologicalArabidopsisBiological EvolutionBiomassComputational BiologyComputer SimulationGame TheoryLightPlant DevelopmentPlantsSelection, GeneticUser-Computer Interface

Identifiers

PMID31433817
PMCPMC6703680
OpenAlexW2969985377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.