Evidence map›Paper›PMID 31432338›Full record

ArticleJournal of industrial microbiology & biotechnology2019

Characterization of the microbiota in long- and short-term natural indigo fermentation.

Zhihao Tu, Helena de Fátima Silva Lopes, Kensuke Igarashi, Isao Yumoto

Abstract read
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In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Frontiers in microbiology · 2022
    Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zhihao TuGraduate School of Agriculture, Hokkaido University, Sapporo, Japan.
Helena de Fátima Silva LopesGraduate School of Agriculture, Hokkaido University, Sapporo, Japan.
Kensuke IgarashiBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology, Sapporo, Japan.
Isao YumotoGraduate School of Agriculture, Hokkaido University, Sapporo, Japan. i.yumoto@aist.go.jp.ORCID http://orcid.org/0000-0002-4349-0324

Funding

Japan Society for the Promotion of Science 2357012 & 16K07684
6 · The paper itself

Abstract

The duration for which the indigo-reducing state maintenance in indigo natural fermentation in batch dependent. The microbiota was analyzed in two batches of sukumo fermentation fluids that lasted for different durations (Batch 1: less than 2 months; Batch 2: nearly 1 year) to understand the mechanisms underlying the sustainability and deterioration of this natural fermentation process. The transformation of the microbiota suggested that the deterioration of the fermentation fluid is associated with the relative abundance of Alcaligenaceae. Principal coordinates analysis (PCoA) showed that the microbial community maintained a very stable state in only the long-term Batch 2. Therefore, entry of the microbiota into a stable state under alkaline anaerobic condition is an important factor for maintenance of indigo fermentation for long duration. This is the first report on the total transformation of the microbiota for investigation of long-term maintenance mechanisms and to address the problem of deterioration in indigo fermentation.

Indexed as

FermentationMicrobiotaBioreactorsDNA, BacterialIndigo CarmineDNA, BacterialIndigo CarmineAlcaligenaceaeAlkalibacteriumAmphibacillusIndigo reductionNatural fermentationNext-generation sequencing

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.