Evidence map›Paper›PMID 31431509›Full record

ArticlemSystems2019

Strategies for Building Computing Skills To Support Microbiome Analysis: a Five-Year Perspective from the EDAMAME Workshop.

Ashley Shade, Taylor K Dunivin, Jinlyung Choi, Tracy K Teal, Adina C Howe

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ashley ShadeDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA shadeash@msu.edu.ORCID https://orcid.org/0000-0002-7189-3067
Taylor K DunivinDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Jinlyung ChoiDepartment of Agricultural and Biosystems Engineering, Iowa State University, Ames, Iowa, USA.ORCID https://orcid.org/0000-0003-4546-2789
Tracy K TealData Carpentry, Davis, California, USA.
Adina C HoweDepartment of Agricultural and Biosystems Engineering, Iowa State University, Ames, Iowa, USA.

Funding

A Short Course in Computation, Statistical Analyses, and Interpretation of Microbial Metagenome DataR25GM115335 · NIGMS · MICHIGAN STATE UNIVERSITY · PI SHADE, ASHLEY · 2015 to 2017
$189k
NIGMS NIH HHS R25 GM115335
6 · The paper itself

Abstract

Here, we report our educational approach and learner evaluations of the first 5 years of the Explorations in Data Analysis for Metagenomic Advances in Microbial Ecology (EDAMAME) workshop, held annually at Michigan State University's Kellogg Biological Station from 2014 to 2018. We hope this information will be useful for others who want to organize computing-intensive workshops and will encourage quantitative skill development among microbiologists.

Indexed as

amplicon sequencingbig datacomputingecological statisticsmetagenomicsmicrobiomemulti-omicsprofessional developmentworkforce trainingworkshop

Identifiers

PMID31431509
PMCPMC6702294

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.