ArticleGigaScience2019
A chromosome-level draft genome of the grain aphid Sitobion miscanthi.
Article in GigaScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed.
- Article
- The chromosome-level genome assembly of Sitobion avenae Fabricius (Hemiptera: Aphididae).Scientific data · 2026Article
- Evolutionarily entrenched odorant receptors for (iScience · 2026Article
- Review
- Hemipteran insects experience recurrent and synergistic molecular evolution adapting to diet shift.BMC biology · 2025Article
- Comprehensive Analysis of Cathepsin Genes in Hemiptera: Functional Characterization of the Venomous Cathepsin B fromInsects · 2025Article
- Chromosome-level genome assembly of vetch aphid Megoura crassicauda (Hemiptera: Aphididae).Scientific data · 2025Article
- Comprehensive full-Length transcriptomic resource for wing dimorphism in English green aphid, Sitobion avenae.Scientific data · 2025Article
- A chromosome-level genome assembly of the aphid Semiaphis heraclei (Takahashi).Scientific data · 2025Article
- A-to-I RNA editing ofeLife · 2025Article
- Chromosome-level genome assembly of soybean aphid.Scientific data · 2025Article
- Overexpression of CYP6CY1 is Involved in Imidacloprid Resistance in Sitobion miscanthi (Takahashi) (Homoptera: Aphidae).Neotropical entomology · 2025Article
- Potential Involvement ofInsects · 2024Article
- Seed Coating with Thiamethoxam-Induced Plant Volatiles Mediates the Olfactory Behavior ofInsects · 2024Article
- A high-quality genome assembly of the waterlily aphid Rhopalosiphum nymphaeae.Scientific data · 2024Article
- Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae).G3 (Bethesda, Md.) · 2023Article
- SmCSP4 from aphid saliva stimulates salicylic acid-mediated defence responses in wheat by interacting with transcription factor TaWKRY76.Plant biotechnology journal · 2023Article
- Hybridisation has shaped a recent radiation of grass-feeding aphids.BMC biology · 2023Article
- Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii.Scientific data · 2023Article
- Parthenogenesis in dipterans: a genetic perspective.Proceedings. Biological sciences · 2023Review
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSitobion miscanthi is an ideal model for studying host plant specificity, parthenogenesis-based phenotypic plasticity, and interactions between insects and other species of various trophic levels, such as viruses, bacteria, plants, and natural enemies. However, the genome information for this species has not yet to be sequenced and published. Here, we analyzed the entire genome of a parthenogenetic female aphid colony using Pacific Biosciences long-read sequencing and Hi-C data to generate chromosome-length scaffolds and a highly contiguous genome assembly.
resultsThe final draft genome assembly from 33.88 Gb of raw data was ∼397.90 Mb in size, with a 2.05 Mb contig N50. Nine chromosomes were further assembled based on Hi-C data to a 377.19 Mb final size with a 36.26 Mb scaffold N50. The identified repeat sequences accounted for 26.41% of the genome, and 16,006 protein-coding genes were annotated. According to the phylogenetic analysis, S. miscanthi is closely related to Acyrthosiphon pisum, with S. miscanthi diverging from their common ancestor ∼25.0-44.9 million years ago.
conclusionsWe generated a high-quality draft of the S. miscanthi genome. This genome assembly should help promote research on the lifestyle and feeding specificity of aphids and their interactions with each other and species at other trophic levels. It can serve as a resource for accelerating genome-assisted improvements in insecticide-resistant management and environmentally safe aphid management.
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