Evidence map›Paper›PMID 31430141›Full record

ArticleJournal of chemical information and modeling2019

Evaluation of

Jamie R Nuñez, Sean M Colby, Dennis G Thomas, Malak M Tfaily, Nikola Tolic, Elin M Ulrich, Jon R Sobus, Thomas O Metz, Justin G Teeguarden, Ryan S Renslow

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Mass Spectrometry Adduct Calculator.Journal of chemical information and modeling · 2021
    Article
  13. Journal of chemical information and modeling · 2020
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jamie R NuñezEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Sean M ColbyEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Dennis G ThomasEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.ORCID 0000-0002-9209-8740
Malak M TfailyEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Nikola TolicEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.ORCID 0000-0003-3950-9130
Elin M UlrichU.S. Environmental Protection Agency, Office of Research and Development , National Exposure Research Laboratory , Research Triangle Park , North Carolina 27711 , United States.ORCID 0000-0002-5143-9449
Jon R SobusU.S. Environmental Protection Agency, Office of Research and Development , National Exposure Research Laboratory , Research Triangle Park , North Carolina 27711 , United States.
Thomas O MetzEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.ORCID 0000-0001-6049-3968
Justin G TeeguardenEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Ryan S RenslowEarth and Biological Sciences Directorate , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.ORCID 0000-0002-3969-5570

Funding

Pacific Northwest Advanced Compound Identification CoreU2CES030170 · NIEHS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI METZ, THOMAS O · 2018 to 2021
$4.6M
Next generation, 'Standards-Free' Metabolite Identification PipelineR03CA222443 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI METZ, THOMAS O · 2017 to 2017
$190k
NCI NIH HHS R03 CA222443NIEHS NIH HHS U2C ES030170
6 · The paper itself

Abstract

The current gold standard for unambiguous molecular identification in metabolomics analysis is comparing two or more orthogonal properties from the analysis of authentic reference materials (standards) to experimental data acquired in the same laboratory with the same analytical methods. This represents a significant limitation for comprehensive chemical identification of small molecules in complex samples. The process is time consuming and costly, and the majority of molecules are not yet represented by standards. Thus, there is a need to assemble evidence for the presence of small molecules in complex samples through the use of libraries containing calculated chemical properties. To address this need, we developed a Multi-Attribute Matching Engine (MAME) and a library derived in part from our

Indexed as

Computer SimulationAlgorithmsComputational BiologySmall Molecule LibrariesSmall Molecule Libraries

Identifiers

PMID31430141
PMCPMC7206898

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.