Evidence map›Paper›PMID 31429998›Full record

ArticleHuman mutation2019

De novo GRIN variants in NMDA receptor M2 channel pore-forming loop are associated with neurological diseases.

Jia Li, Jin Zhang, Weiting Tang, Ruth K Mizu, Hirofumi Kusumoto, Wenshu XiangWei, Yuchen Xu, Wenjuan Chen, Johansen B Amin, Chun Hu and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 66 citations in OpenAlex.

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  14. Selective Cell-Surface Expression of Triheteromeric NMDA Receptors.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 6 countries.

Jia LiDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Jin ZhangDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Weiting TangDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Ruth K MizuDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Hirofumi KusumotoDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Wenshu XiangWeiDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Yuchen XuDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Wenjuan ChenDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Johansen B AminDepartment of Neurobiology & Behavior, Stony Brook University School of Medicine, Stony Brook, New York.
Chun HuDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Varun KannanDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Stephanie R KellerDivision of Pediatric Neurology, Emory University School of Medicine, Atlanta, Georgia.
William R WilcoxDivision of Medical Genetics, Department of Human Genetics, Emory University School of Medicine, Atlanta, Georgia.
Johannes R LemkeInstitute of Human Genetics, University of Leipzig Hospitals and Clinics, Leipzig, Germany.
Scott J MyersDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Sharon A SwangerDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.
Lonnie P WollmuthDepartment of Neurobiology & Behavior, Stony Brook University School of Medicine, Stony Brook, New York.
Slavé PetrovskiDepartment of Medicine, The University of Melbourne, Austin Health and Royal Melbourne Hospital, Melbourne, VIC, Australia.
Stephen F TraynelisDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.ORCID 0000-0002-3750-9615
Hongjie YuanDepartment of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, Georgia.ORCID 0000-0002-8127-7145
Emory University · USCentral South University · CNStony Brook School · USAstraZeneca (United Kingdom) · GBUniversity Hospital Leipzig · DE

Funding

Glutamate receptors and human neurological diseaseR35NS111619 · NINDS · EMORY UNIVERSITY · PI Stephen F Traynelis · 2019 to 2026
$6.6M
Minority Supplement for Noele CertainR01NS088479 · NINDS · STATE UNIVERSITY NEW YORK STONY BROOK · PI WOLLMUTH, LONNIE P · 2015 to 2023
$3.9M
Control of Glutamate Receptor FunctionR01NS036654 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 1998 to 2018
$3.7M
NMDAR Mutations & Neurodevelopmental Disorder: from Mechanism to Targeted TherapyR01HD082373 · NICHD · EMORY UNIVERSITY · PI YUAN, HONGJIE · 2015 to 2025
$3.3M
Molecular Properties of Synapses in the Visual CortexR01EY016979 · NEI · STATE UNIVERSITY NEW YORK STONY BROOK · PI WOLLMUTH, LONNIE P · 2005 to 2008
$1.2M
Functional effects of ion channel mutations found via exome sequencingR24NS092989 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 2016 to 2019
$1.1M
Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD) of the National Institutes of Health (NIH) R01HD08237NEI NIH HHS R01 EY016979NICHD NIH HHS R01 HD082373NINDS NIH HHS R01 NS036654NINDS NIH HHS R01 NS088479NINDS NIH HHS R24 NS092989NINDS NIH HHS R35 NS111619
6 · The paper itself

Abstract

N-methyl-D-aspartate receptors (NMDARs) mediate slow excitatory postsynaptic transmission in the central nervous system, thereby exerting a critical role in neuronal development and brain function. Rare genetic variants in the GRIN genes encoding NMDAR subunits segregated with neurological disorders. Here, we summarize the clinical presentations for 18 patients harboring 12 de novo missense variants in GRIN1, GRIN2A, and GRIN2B that alter residues in the M2 re-entrant loop, a region that lines the pore and is intolerant to missense variation. These de novo variants were identified in children with a set of neurological and neuropsychiatric conditions. Evaluation of the receptor cell surface expression, pharmacological properties, and biophysical characteristics show that these variants can have modest changes in agonist potency, proton inhibition, and surface expression. However, voltage-dependent magnesium inhibition is significantly reduced in all variants. The NMDARs hosting a single copy of a mutant subunit showed a dominant reduction in magnesium inhibition for some variants. These variant NMDARs also show reduced calcium permeability and single-channel conductance, as well as altered open probability. The data suggest that M2 missense variants increase NMDAR charge transfer in addition to varied and complex influences on NMDAR functional properties, which may underlie the patients' phenotypes.

Indexed as

Mutation, MissenseAnimalsChildDisease Models, AnimalFemaleHEK293 CellsHumansMaleModels, MolecularNerve Tissue ProteinsNervous System DiseasesPhenotypeProtein ConformationReceptors, N-Methyl-D-AspartateXenopus laevisGRIN1 protein, humanNerve Tissue ProteinsNR2B NMDA receptorReceptors, N-Methyl-D-AspartateautismchannelopathyepilepsyGluNglutamate receptorintellectual disabilitymissense variantsmovement disorderneurological diseasestranslation studytransmembrane domain

Identifiers

PMID31429998
PMCPMC6874887
OpenAlexW2969618849

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.