ArticleGenetics and molecular biology2020
Genome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean.
Article in Genetics and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Genome-wide identification of the nuclear redox protein gene family revealed its potential role in drought stress tolerance in rice.Frontiers in plant science · 2025Article
- Screening for Drought Tolerance Within a Common Bean (Plants (Basel, Switzerland) · 2024Article
- Unraveling the drought-responsive transcriptomes in nodules of two common bean genotypes during biological nitrogen fixation.Frontiers in plant science · 2024Article
- Characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Whole-genome resequencing of common bean elite breeding lines.Scientific reports · 2023Article
- Comparative Transcriptome Analysis of Tolerant and Sensitive Genotypes of Common Bean (Plants (Basel, Switzerland) · 2023Article
- Dissecting the genetic basis of drought responses in common bean using natural variation.Frontiers in plant science · 2023Article
- The aquaporin gene PvXIP1;2 conferring drought resistance identified by GWAS at seedling stage in common bean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Transcriptome Analyses of Near Isogenic Lines Reveal Putative Drought Tolerance Controlling Genes in Wheat.Frontiers in plant science · 2022Article
- Integrated transcriptome and small RNA sequencing analyses reveal a drought stress response network in Sophora tonkinensis.BMC plant biology · 2021Article
- Review
- Genome-wide identification of the BURP domain-containing genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genome-wide transcriptional changes triggered by water deficit on a drought-tolerant common bean cultivar.BMC plant biology · 2020Article
- Genome-Wide Association Studies Detect Multiple QTLs for Productivity in Mesoamerican Diversity Panel of Common Bean Under Drought Stress.Frontiers in plant science · 2020Article
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genes related to the response to drought stress in leaf and root tissue of drought-susceptible (DS) and tolerant (DT) genotypes were characterized by RNA-Seq. In total, 54,750 transcripts, representative of 28,590 genes, were identified; of these, 1,648 were of high-fidelity (merge of 12 libraries) and described for the first time in the Andean germplasm. From the 1,239 differentially expressed genes (DEGs), 458 were identified in DT, with a predominance of genes in categories of oxidative stress, response to stimulus and kinase activity. Most genes related to oxidation-reduction terms in roots were early triggered in DT (T75) compared to DS (T150) suggestive of a mechanism of tolerance by reducing the damage from ROS. Among the KEGG enriched by DEGs up-regulated in DT leaves, two related to the formation of Sulfur-containing compounds, which are known for their involvement in tolerance to abiotic stresses, were common to all treatments. Through qPCR, 88.64% of the DEGs were validated. A total of 151,283 variants were identified and functional effects estimated for 85,780. The raw data files were submitted to the NCBI database. A transcriptome map revealed new genes and isoforms under drought. These results supports a better understanding of the drought tolerance mechanisms in beans.
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