Evidence map›Paper›PMID 31429726›Full record

ArticleBMC cancer2019

Parkin gene mutations are not common, but its epigenetic inactivation is a frequent event and predicts poor survival in advanced breast cancer patients.

Khushnuma Wahabi, Ahmad Perwez, Shabeena Kamarudheen, Zafar Iqbal Bhat, Anurag Mehta, M Moshahid A Rizvi

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
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  9. Deficiency in the mitophagy mediator Parkin accelerates murine skin allograft rejection.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2024
    Article
  10. Review
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  13. The RING finger protein family in health and disease.Signal transduction and targeted therapy · 2022
    Review
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  15. Article
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  18. Implication of alterations in Parkin gene among North Indian patients with colorectal cancer.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Khushnuma WahabiGenome Biology Laboratory, Department of Biosciences, Jamia Millia Islamia, New Delhi, 110025, India.
Ahmad PerwezGenome Biology Laboratory, Department of Biosciences, Jamia Millia Islamia, New Delhi, 110025, India.
Shabeena KamarudheenGenome Biology Laboratory, Department of Biosciences, Jamia Millia Islamia, New Delhi, 110025, India.
Zafar Iqbal BhatGenome Biology Laboratory, Department of Biosciences, Jamia Millia Islamia, New Delhi, 110025, India.
Anurag MehtaDepartment of Laboratory & Transfusion Services and Director Research, Rajiv Gandhi Cancer Institute, Rohini, Delhi, 110085, India.
M Moshahid A RizviGenome Biology Laboratory, Department of Biosciences, Jamia Millia Islamia, New Delhi, 110025, India. rizvijmi@gmail.com.ORCID http://orcid.org/0000-0002-4449-7819
Jamia Millia Islamia · INRajiv Gandhi Cancer Institute and Research Centre · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundProgression of breast cancer involves both genetic and epigenetic factors. Parkin gene has been identified as a tumor suppressor gene in the pathogenesis of various cancers. Nevertheless, the putative role of Parkin in breast cancer remains largely unknown. Therefore, we evaluated the regulation of Parkin through both genetic and epigenetic mechanisms in breast carcinoma.

methodA total of 156 breast carcinoma and their normal adjacent tissue samples were included for mutational analysis through SSCP, and sequencing. MS-PCR was employed for methylation study whereas Parkin protein expression was evaluated using immunohistochemistry and western blotting. For the survival analysis, Kaplan-Meier curve and Cox's proportional hazard model were used.

resultsIn expression analysis, Parkin protein expression was found to be absent in 68% cases of breast cancer. We found that aberrant promoter methylation of Parkin gene is a frequent incident in breast cancer tumors and cell lines. Our MS-PCR result showed that Parkin promoter methylation has a significant role (p = 0.0001) in reducing the expression of Parkin protein. Consistently, expression of Parkin was rectified by treatment with 5-aza-2-deoxycytidine. We also found significant associations of both Parkin negative expression and Parkin promoter methylation with the clinical variables. Furthermore, we found a very low frequency (5.7%) of Parkin mutation with no clinical significance. In survival analysis, patients having Parkin methylation and Parkin loss had a worse outcome compared to those harboring none of these events.

conclusionOverall, these results suggested that promoter methylation-mediated loss of Parkin expression could be used as a prognostic marker for the survival of breast cancer.

Indexed as

Mutation RateBiomarkers, TumorBreast NeoplasmsDNA MethylationDNA Mutational AnalysisDown-RegulationEpigenesis, GeneticExonsFemaleGene Expression Regulation, NeoplasticHEK293 CellsHumansKaplan-Meier EstimateMCF-7 CellsMiddle AgedPrognosisBiomarkers, Tumorparkin proteinUbiquitin-Protein LigasesBreast cancerExpressionMethylationMutationPARK-2 gene

Identifiers

PMID31429726
PMCPMC6700819
OpenAlexW2969439616

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.