ArticleBMC genomics2019
The importance of genome sequence quality to microbial comparative genomics.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Comparative genomics reveals immunomodulatory and anti-obesity traits of Lactococcus lactis subsp. lactis.Applied microbiology and biotechnology · 2026Article
- Key findings from 15 years ofApplied and environmental microbiology · 2025Review
- Kastor: a reference-based comparative approach for assessment and correction of gene-fragmenting errors in long-read assemblies of small genomes.BMC genomics · 2025Article
- Genomic signatures of sensory adaptation and evolution in pangolins.BMC genomics · 2024Article
- BakRep - a searchable large-scale web repository for bacterial genomes, characterizations and metadata.Microbial genomics · 2024Article
- Seven quick tips for gene-focused computational pangenomic analysis.BioData mining · 2024Article
- PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training.Microbial genomics · 2024Article
- Assembly collapsing versus heterozygosity oversizing: detection of homokaryotic and heterokaryoticMicrobial genomics · 2024Article
- A practical guide and Galaxy workflow to avoid inter-plasmidic repeat collapse and false gene loss in Unicycler's hybrid assemblies.Microbial genomics · 2024Article
- Uncovering rearrangements in the Tibetan antelope via population-derived genome refinement and comparative analysis with homologous species.Frontiers in genetics · 2024Article
- The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S.BMC genomics · 2023Article
- Draft Genome Sequence ofCurrent genomics · 2023Article
- Elucidating the genomic history of commercially usedFrontiers in cellular and infection microbiology · 2023Article
- Article
- The Relationship between Ciprofloxacin Resistance and Genotypic Changes inPathogens (Basel, Switzerland) · 2022Article
- Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734.BMC genomics · 2022Article
- Combination of Whole Genome Sequencing and Metagenomics for Microbiological Diagnostics.International journal of molecular sciences · 2022Review
- Article
- Identification and profiling of microbial community from industrial sludge.Archives of microbiology · 2022Article
- Resolving taxonomic confusion: establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2022Review
Corrections and comments
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Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The quality of microbial genome sequences has been a concern ever since the emergence of genome sequencing. The quality of the genome assemblies is dependent on the sequencing technology used and the aims for which the sequence was generated. Novel sequencing and bioinformatics technologies are not intrinsically better than the older technologies, although they are generally more efficient. In this correspondence, the importance for comparative genomics of additional manual assembly efforts over autoassembly and careful annotation is emphasized.
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Registered trials
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