Evidence map›Paper›PMID 31428857›Full record

ArticleProtoplasma2020

Elevated expression of cellular SYNE1, MMP10, and GTPase1 and their regulatory role in hepatocellular carcinoma progression.

Laila H Faraj Shaglouf, Maryam Ranjpour, Saima Wajid, Swatantra Kumar Jain

Abstract read
PubMed Publisher
In one paragraph

Article in Protoplasma, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 40 citations in OpenAlex.

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  8. Molecular Subtypes of Head and Neck Cancer in Patients of African Ancestry.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  9. Article
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  12. Biomedicines · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Laila H Faraj ShagloufDepartment of Biotechnology, School of Chemical and Life Science, Jamia Hamdard, New Delhi, 110062, India.
Maryam RanjpourDepartment of Biotechnology, School of Chemical and Life Science, Jamia Hamdard, New Delhi, 110062, India.
Saima WajidDepartment of Biotechnology, School of Chemical and Life Science, Jamia Hamdard, New Delhi, 110062, India.
Swatantra Kumar JainDepartment of Biochemistry, Hamdard Institute of Medical Science and Research, Jamia Hamdard, New Delhi, 110062, India. skjain@jamiahamdard.ac.in.
Jamia Hamdard · INDepartment of Biotechnology · IN

Funding

University Grants Commission (IN) 40-155/2011(SR)
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is the most common primary liver malignancy resulting in high mortality. HCC progression is associated with abnormal signal transduction that changes cell signaling pathways and ultimately leads to dysregulation of cell functions and uncontrolled cell proliferation. Present study was undertaken with the objective to identify differentially expressed proteins and quantify their transcript expression in the liver of HCC-bearing rats vis-à-vis controls and to decipher the network involving interaction of genes coding for the characterized proteins to an insight into mechanism of HCC tumorigenesis. 2D-Electrophoresis and MALDI-TOF-MS/MS were used to characterize differentially expressed proteins in DEN (diethylnitrosamine)-induced HCC tissue using the protocol reported by us earlier. Real-time PCR was performed to quantify the expression of transcripts for the identified proteins. GENEMANIA, an interacting network of genes coding for selected proteins, was deciphered that provided the functional role of these proteins in HCC progression. Upregulation of proteins SYNE1, MMP10, and MTG1 was observed. The mRNA quantification revealed elevated expression of their transcripts at HCC initiation, progression, and tumor stages. Network analysis showed the involvement of the genes coding for these proteins in dysregulation of signaling pathways during HCC development. The elevated expression of SYNE1, MMP10, and MTG1 suggests the role of these proteins as potential players in HCC progression and tumorigenesis.

Indexed as

Disease ProgressionAmino Acid SequenceAnimalsCarcinoma, HepatocellularGene Expression Regulation, NeoplasticGene Regulatory NetworksGTP PhosphohydrolasesLiver NeoplasmsMatrix Metalloproteinase 10Mitochondrial ProteinsNerve Tissue ProteinsNuclear ProteinsPeptidesRatsRats, WistarRNA, MessengerGTP PhosphohydrolasesMatrix Metalloproteinase 10Mitochondrial ProteinsMtg1 protein, ratNerve Tissue ProteinsNuclear ProteinsPeptidesRNA, MessengerSyne1 protein, ratHepatocellular carcinomaMMP10MTG1 and gene interaction networkSYNE1

Identifiers

PMID31428857
OpenAlexW2969822547

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.