Evidence map›Paper›PMID 31428787›Full record

ArticleNucleic acids research2019

TrmB, a tRNA m7G46 methyltransferase, plays a role in hydrogen peroxide resistance and positively modulates the translation of katA and katB mRNAs in Pseudomonas aeruginosa.

Narumon Thongdee, Juthamas Jaroensuk, Sopapan Atichartpongkul, Jurairat Chittrakanwong, Kamonchanok Chooyoung, Thanyaporn Srimahaeak, Pimchai Chaiyen, Paiboon Vattanaviboon, Skorn Mongkolsuk, Mayuree Fuangthong

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 55 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
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  14. Combined Prokaryotic Transcriptomics and Proteomics Analysis of ClinicalInternational journal of molecular sciences · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. RNA modifying enzymes shape tRNA biogenesis and function.The Journal of biological chemistry · 2024
    Review
  19. The modification landscape ofRNA (New York, N.Y.) · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Narumon ThongdeeApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Juthamas JaroensukApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Sopapan AtichartpongkulLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.
Jurairat ChittrakanwongApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Kamonchanok ChooyoungApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Thanyaporn SrimahaeakApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Pimchai ChaiyenSchool of Biomolecular Sciences and Engineering, Vidyasirimedhi Institute of Science and Technology, Rayong, Thailand.
Paiboon VattanaviboonApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Skorn MongkolsukApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Mayuree FuangthongApplied Biological Sciences Program, Chulabhorn Graduate Institute, Chulabhorn Royal Academy, Bangkok, Thailand.
Chulabhorn Graduate Institute · THChulabhorn Research Institute · THVidyasirimedhi Institute of Science and Technology · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellular response to oxidative stress is a crucial mechanism that promotes the survival of Pseudomonas aeruginosa during infection. However, the translational regulation of oxidative stress response remains largely unknown. Here, we reveal a tRNA modification-mediated translational response to H2O2 in P. aeruginosa. We demonstrated that the P. aeruginosa trmB gene encodes a tRNA guanine (46)-N7-methyltransferase that catalyzes the formation of m7G46 in the tRNA variable loop. Twenty-three tRNA substrates of TrmB with a guanosine residue at position 46 were identified, including 11 novel tRNA substrates. We showed that loss of trmB had a strong negative effect on the translation of Phe- and Asp-enriched mRNAs. The trmB-mediated m7G modification modulated the expression of the catalase genes katA and katB, which are enriched with Phe/Asp codons at the translational level. In response to H2O2 exposure, the level of m7G modification increased, consistent with the increased translation efficiency of Phe- and Asp-enriched mRNAs. Inactivation of trmB led to decreased KatA and KatB protein abundance and decreased catalase activity, resulting in H2O2-sensitive phenotype. Taken together, our observations reveal a novel role of m7G46 tRNA modification in oxidative stress response through translational regulation of Phe- and Asp-enriched genes, such as katA and katB.

Indexed as

Amino Acid SequenceBacterial ProteinsCatalaseGuanosineHumansHydrogen PeroxideOxidation-ReductionOxidative StressPseudomonas aeruginosaPseudomonas InfectionsRNA, TransfertRNA MethyltransferasesBacterial ProteinsCatalaseGuanosineHydrogen PeroxideRNA, TransfertRNA Methyltransferases

Identifiers

PMID31428787
PMCPMC6755087
OpenAlexW2969912248

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.