Evidence map›Paper›PMID 31427604›Full record

ArticleScientific reports2019

Tissue-specific progesterone receptor-chromatin binding and the regulation of progesterone-dependent gene expression.

D T Dinh, J Breen, L K Akison, F J DeMayo, H M Brown, R L Robker, D L Russell

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

D T DinhRobinson Research Institute, Adelaide Medical School, University of Adelaide, Adelaide, Australia.
J BreenRobinson Research Institute, Adelaide Medical School, University of Adelaide, Adelaide, Australia.ORCID http://orcid.org/0000-0001-6184-0925
L K AkisonChild Health Research Centre, Centre for Children's Health Research, The University of Queensland, South Brisbane, Qld, 4101, Australia.ORCID http://orcid.org/0000-0002-2667-3743
F J DeMayoPregnancy and Female Reproduction Group, National Institute of Environmental Health Sciences, Research Triangle Park, Durham, NC, 27709, USA.
H M BrownRobinson Research Institute, Adelaide Medical School, University of Adelaide, Adelaide, Australia.
R L RobkerRobinson Research Institute, Adelaide Medical School, University of Adelaide, Adelaide, Australia.
D L RussellRobinson Research Institute, Adelaide Medical School, University of Adelaide, Adelaide, Australia. darryl.russell@adelaide.edu.au.
The University of Adelaide · AUAustralian Research Council · AUChildren's Medical Research Institute · AUNational Institute of Environmental Health Sciences · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Progesterone receptor (PGR) co-ordinately regulates ovulation, fertilisation and embryo implantation through tissue-specific actions, but the mechanisms for divergent PGR action are poorly understood. Here we characterised PGR activity in mouse granulosa cells using combined ChIP-seq for PGR and H3K27ac and gene expression microarray. Comparison of granulosa, uterus and oviduct PGR-dependent genes showed almost complete tissue specificity in PGR target gene profiles. In granulosa cells 82% of identified PGR-regulated genes bound PGR within 3 kb of the gene and PGR binding sites were highly enriched in proximal promoter regions in close proximity to H3K27ac-modified active chromatin. Motif analysis showed highly enriched PGR binding to the PGR response element (GnACAnnnTGTnC), but PGR also interacted significantly with other transcription factor binding motifs. In uterus PGR showed far more tendency to bind intergenic chromatin regions and low evidence of interaction with other transcription factors. This is the first genome-wide description of PGR action in granulosa cells and systematic comparison of diverse PGR action in different reproductive tissues. It clarifies finely-tuned contextual PGR-chromatin interactions with implications for more targeted reproductive medicine.

Indexed as

Gene Expression RegulationBase SequenceBinding SitesChromatinFemaleGranulosa CellsHistonesHumansNucleotide MotifsOrgan SpecificityOvaryOvulationPosition-Specific Scoring MatricesProgesteroneProtein BindingReceptors, ProgesteroneChromatinHistonesProgesteroneReceptors, Progesterone

Identifiers

PMID31427604
PMCPMC6700090
OpenAlexW2969873517

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.