Evidence map›Paper›PMID 31426861›Full record

ArticleActa neuropathologica communications2019

Transcriptome clarifies mechanisms of lesion genesis versus progression in models of Ccm3 cerebral cavernous malformations.

Janne Koskimäki, Dongdong Zhang, Yan Li, Laleh Saadat, Thomas Moore, Rhonda Lightle, Sean P Polster, Julián Carrión-Penagos, Seán B Lyne, Hussein A Zeineddine and 19 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Acta neuropathologica communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
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  18. Endothelial Differentiation ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 4 institutions in 1 country.

Janne KoskimäkiNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Dongdong ZhangNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Yan LiCenter for Research Informatics, The University of Chicago, Chicago, IL, USA.
Laleh SaadatNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Thomas MooreNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Rhonda LightleNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Sean P PolsterNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Julián Carrión-PenagosNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Seán B LyneNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Hussein A ZeineddineNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Changbin ShiNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Robert ShenkarNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.ORCID 0000-0002-1300-6845
Sharbel RomanosNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Kenneth AvnerNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Abhinav SrinathNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Le ShenNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Matthew R DetterThe Molecular Genetics and Microbiology Department, Duke University Medical Center, Durham, NC, USA.
Daniel SnellingsThe Molecular Genetics and Microbiology Department, Duke University Medical Center, Durham, NC, USA.
Ying CaoNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Miguel A Lopez-RamirezDepartment of Medicine, University of California San Diego, La Jolla, CA, USA.
Gregory FonsecaDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.
Alan T TangDepartment of Medicine and Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA, USA.
Pieter FaberUniversity of Chicago Genomics Facility, The University of Chicago, Chicago, IL, USA.
Jorge AndradeCenter for Research Informatics, The University of Chicago, Chicago, IL, USA.
Mark GinsbergDepartment of Medicine, University of California San Diego, La Jolla, CA, USA.
Mark L KahnDepartment of Medicine and Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA, USA.
Douglas A MarchukThe Molecular Genetics and Microbiology Department, Duke University Medical Center, Durham, NC, USA.
Romuald GirardNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Issam A AwadNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA. iawad@uchicago.edu.
University of Chicago · USDuke Medical Center · USUniversity of California San Diego · USUniversity of Pennsylvania · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI MARK W. LINGEN · 1985 to 2026
$122.1M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
HEMATOLOGY CLINICAL RESEARCH TRAINING PROGRAMT32HL007439 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LAWRENCE F BRASS, PETER S KLEIN · 1985 to 2026
$17.1M
Somatic mutation(s) and cellular changes in CCM pathogenesisP01NS092521 · NINDS · DUKE UNIVERSITY · PI KAHN, MARK L · 2015 to 2024
$12.9M
Training In Cardiovascular Physiology & PharmacologyT32HL007444 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ju Chen, Robert Scott Ross · 1985 to 2026
$11.1M
Heg-CCM Signaling in Cardiovascular Development and DiseaseR01HL094326 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI KAHN, MARK L · 2009 to 2018
$3.5M
UCSD PRIDE Faculty Development Program in Cardiovascular SciencesR25HL145817 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Robert Scott Ross, Joann Trejo · 2019 to 2026
$3.3M
TLR4 and the microbiome in CCM diseaseR01NS100949 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI KAHN, MARK L · 2017 to 2021
$2.8M
Investigating the Molecular Pathways of Cerebral Cavernous Malformation MaturationF30HL140871 · NHLBI · DUKE UNIVERSITY · PI DETTER, MATTHEW ROBERT · 2018 to 2021
$91k
The molecular pathogenesis of cerebral cavernous malformationsF30NS100252 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI TANG, ALAN TIEN · 2017 to 2018
$80k
NCI NIH HHS P30 CA014599NHLBI NIH HHS F30 HL140871NHLBI NIH HHS R01 HL094326NHLBI NIH HHS R25 HL145817NHLBI NIH HHS T32 HL007439NHLBI NIH HHS T32 HL007444NIGMS NIH HHS T32 GM007171NIH HHS F30 HL140871NIH HHS P30 CA14599NIH HHS T32 GM007171NINDS NIH HHS F30 NS100252NINDS NIH HHS P01 NS092521NINDS NIH HHS R01 NS100949
6 · The paper itself

Abstract

Cerebral cavernous malformations (CCMs) are dilated capillaries causing epilepsy and stroke. Inheritance of a heterozygous mutation in CCM3/PDCD10 is responsible for the most aggressive familial form of the disease. Here we studied the differences and commonalities between the transcriptomes of microdissected lesional neurovascular units (NVUs) from acute and chronic in vivo Ccm3/Pdcd10

Indexed as

Disease ProgressionAnimalsApoptosis Regulatory ProteinsCentral Nervous System NeoplasmsGene Regulatory NetworksHemangioma, Cavernous, Central Nervous SystemMiceMice, Inbred C57BLMice, TransgenicTranscriptomeApoptosis Regulatory ProteinsPDCD10 protein, mouseCavernous angiomaCcm3Cerebral cavernous malformationHemangiomamiRNAMouse modelTranscriptome

Identifiers

PMID31426861
PMCPMC6699077
OpenAlexW2969804619

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.