Evidence map›Paper›PMID 31426752›Full record

ArticleBMC plant biology2019

The specific MYB binding sites bound by TaMYB in the GAPCp2/3 promoters are involved in the drought stress response in wheat.

Lin Zhang, Zhiqiang Song, Fangfang Li, Xixi Li, Haikun Ji, Shushen Yang

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
7.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

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  16. TinkeringInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lin ZhangCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Zhiqiang SongCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Fangfang LiCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xixi LiCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Haikun JiCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Shushen YangCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China. yangshushen2014@163.com.ORCID http://orcid.org/0000-0001-5899-5934
Northwest A&F University · CNNorth West Agriculture and Forestry University · CN

Funding

National Natural Science Foundation of China 31271625National Natural Science Foundation of China 31671609
6 · The paper itself

Abstract

backgroundDrought stress is one of the major abiotic stresses that affects plant growth and productivity. The GAPCp genes play important roles in drought stress tolerance in multiple species. The aim of this experiment was to identify the core cis-regulatory elements that may respond to drought stress in the GAPCp2 and GAPCp3 promoter sequences.

resultsIn this study, the promoters of GAPCp2 and GAPCp3 were cloned. The promoter activities were significantly improved under abiotic stress via regulation of Rluc reporter gene expression, while promoter sequence analysis indicated that these fragments were not almost identical. In transgenic Arabidopsis with the expression of the GUS reporter gene under the control of one of these promoters, the activities of GUS were strong in almost all tissues except the seeds, and the activities were induced after abiotic stress. The yeast one-hybrid system and EMSA demonstrated that TaMYB bound TaGAPCp2P/3P. By analyzing different 5' deletion mutants of these promoters, it was determined that TaGAPCp2P (- 1312~ - 528) and TaGAPCp3P (- 2049~ - 610), including the MYB binding site, contained enhancer elements that increased gene expression levels under drought stress. We used an effector and a reporter to co-transform tobacco and found that TaMYB interacted with the specific MYB binding sites of TaGAPCp2P (- 1197~ - 635) and TaGAPCp3P (- 1456~ - 1144 and - 718~ - 610) in plant cells. Then, the Y1H system and EMSA assay demonstrated that these MYB binding sites in TaGAPCp2P (- 1135 and - 985) and TaGAPCp3P (- 1414 and - 665) were the target cis-elements of TaMYB. The deletion of the specific MYB binding sites in the promoter fragments significantly restrained the drought response, and these results confirmed that these MYB binding sites (AACTAAA/C) play vital roles in improving the transcription levels under drought stress. The results of qRT-PCR in wheat protoplasts transiently overexpressing TaMYB indicated that the expression of TaGAPCp2/3 induced by abiotic stress was upregulated by TaMYB.

conclusionThe MYB binding sites (AACTAAA/C) in TaGAPCp2P/3P were identified as the key cis-elements for responding to drought stress and were bound by the transcription factor TaMYB.

Indexed as

DroughtsBinding SitesGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)NicotianaPlant ProteinsPlants, Genetically ModifiedPromoter Regions, GeneticStress, PhysiologicalTranscription FactorsTriticumGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Plant ProteinsTranscription FactorsDrought toleranceTaGAPCp promoterTaMYBTriticum aestivum

Identifiers

PMID31426752
PMCPMC6701022
OpenAlexW2969675551

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.