Evidence map›Paper›PMID 31425646›Full record

ArticleACS combinatorial science2019

A Solution Phase Platform to Characterize Chemical Reaction Compatibility with DNA-Encoded Chemical Library Synthesis.

Anokha S Ratnayake, Mark E Flanagan, Timothy L Foley, Justin D Smith, Jillian G Johnson, Justin Bellenger, Justin I Montgomery, Brian M Paegel

Open access · greenAbstract read
In one paragraph

Article in ACS combinatorial science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Building Block-Centric Approach to DNA-Encoded Library Design.Journal of chemical information and modeling · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Translating the Genome into Drugs.Accounts of chemical research · 2023
    Article
  10. Article
  11. The Potential of Micellar Media in the Synthesis of DNA-Encoded Libraries.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Review
  12. Chemically Stabilized DNA Barcodes for DNA-Encoded Chemistry.Angewandte Chemie (International ed. in English) · 2021
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Anokha S RatnayakePfizer Worldwide Research and Development , Groton , Connecticut 06340 , United States.ORCID 0000-0002-9487-9751
Mark E FlanaganPfizer Worldwide Research and Development , Groton , Connecticut 06340 , United States.
Timothy L FoleyPfizer Worldwide Research and Development , Groton , Connecticut 06340 , United States.
Justin D SmithPfizer Worldwide Research and Development , Groton , Connecticut 06340 , United States.
Jillian G JohnsonPfizer Worldwide Research and Development , Groton , Connecticut 06340 , United States.
Justin BellengerPfizer Worldwide Research and Development , Groton , Connecticut 06340 , United States.
Justin I MontgomeryPfizer Worldwide Research and Development , Groton , Connecticut 06340 , United States.
Brian M PaegelDepartment of Chemistry , The Scripps Research Institute , 130 Scripps Way , Jupiter , Florida 33458 , United States.
Pfizer (United States) · USScripps Research Institute · US

Funding

High-Throughput Droplet-Scale Functional Screening of DNA-Encoded Combinatorial LibrariesR01GM120491 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI PAEGEL, BRIAN M · 2017 to 2020
$1.4M
NIGMS NIH HHS R01 GM120491
6 · The paper itself

Abstract

DNA-encoded chemical library (DECL) synthesis must occur in aqueous media under conditions that preserve the integrity of the DNA encoding tag. While the identification of "DNA-compatible" reaction conditions is critical for the development of DECL designs that explore previously inaccessible chemical space, reports measuring such compatibility have been largely restricted to methods that do not faithfully capture the impact of reaction conditions on DNA fidelity in solution phase. Here we report a comprehensive methodology that uses soluble DNA substrates that exactly recapitulate DNA's exposure to the chemically reactive species of DECL synthesis. This approach includes the assessment of chemical fidelity (reaction yield and purity), encoding fidelity (ligation efficiency), and readability (DNA compatibility), revealing the fate of the DNA tag during DECL chemistry from a single platform.

Indexed as

Combinatorial Chemistry TechniquesDNAMolecular StructureSmall Molecule LibrariesSolutionsDNASmall Molecule LibrariesSolutionsDNA damageDNA-encoded chemical libraries (DECLs)on-DNA chemistryquantitative PCR (qPCR)

Identifiers

PMID31425646
PMCPMC6938256
OpenAlexW2969846984

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.