Evidence map›Paper›PMID 31425520›Full record

ArticlePloS one2019

Urine proteomics study reveals potential biomarkers for the differential diagnosis of cholangiocarcinoma and periductal fibrosis.

Kassaporn Duangkumpha, Thomas Stoll, Jutarop Phetcharaburanin, Puangrat Yongvanit, Raynoo Thanan, Anchalee Techasen, Nisana Namwat, Narong Khuntikeo, Nittaya Chamadol, Sittiruk Roytrakul and 5 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Kassaporn DuangkumphaDepartment of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Thomas StollQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Jutarop PhetcharaburaninDepartment of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Puangrat YongvanitCholangiocarcinoma Research Institute, Khon Kaen University, Khon Kaen, Thailand.
Raynoo ThananDepartment of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Anchalee TechasenCholangiocarcinoma Research Institute, Khon Kaen University, Khon Kaen, Thailand.
Nisana NamwatDepartment of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Narong KhuntikeoCholangiocarcinoma Research Institute, Khon Kaen University, Khon Kaen, Thailand.
Nittaya ChamadolCholangiocarcinoma Research Institute, Khon Kaen University, Khon Kaen, Thailand.
Sittiruk RoytrakulProteomics Research Laboratory, Genome Institute, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, Thailand.
Jason MulvennaQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Ahmed MohamedQIMR Berghofer Medical Research Institute, Brisbane, Australia.ORCID 0000-0001-6507-5300
Alok K ShahQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Michelle M HillQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Watcharin LoilomeDepartment of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.ORCID 0000-0001-8572-5577
Khon Kaen University · THQIMR Berghofer Medical Research Institute · AUNational Science and Technology Development Agency · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cholangiocarcinoma (CCA) is a primary malignant tumor of the epithelial lining of biliary track associated with endemic Opisthorchis viverrini (Ov) infection in northeastern Thailand. Ov-associated periductal fibrosis (PDF) is the precancerous lesion for CCA, and can be detected by ultrasonography (US) to facilitate early detection. However, US cannot be used to distinguish PDF from cancer. Therefore, the objective of this study was to discover and qualify potential urine biomarkers for CCA detection in at-risk population. Biomarker discovery was conducted on pooled urine samples, 42 patients per group, with PDF or normal bile duct confirmed by ultrasound. After depletion of high abundance proteins, 338 urinary proteins were identified from the 3 samples (normal-US, PDF-US, CCA). Based on fold change and literature review, 70 candidate proteins were selected for qualification by multiple reaction monitoring mass spectrometry (MRM-MS) in 90 individual urine samples, 30 per group. An orthogonal signal correction projection to latent structures discriminant analysis (O-PLS-DA) multivariate model constructed from the 70 candidate biomarkers significantly discriminated CCA from normal and PDF groups (P = 0.003). As an independent validation, the expression of 3 candidate proteins was confirmed by immunohistochemistry in CCA tissues: Lysosome associated membrane glycoprotein 1 (LAMP1), lysosome associated membrane glycoprotein 2 (LAMP2) and cadherin-related family member 2 (CDHR2). Further evaluation of these candidate biomarkers in a larger cohort is needed to support their applicability in a clinical setting for screening and monitoring early CCA and for CCA surveillance.

Indexed as

AdultAgedAnimalsBile Duct NeoplasmsBile DuctsBiomarkers, TumorCholangiocarcinomaDiagnosis, DifferentialFemaleFibrosisHumansMaleMiddle AgedOpisthorchiasisPrecancerous ConditionsProteomicsBiomarkers, Tumor

Identifiers

PMID31425520
PMCPMC6699711
OpenAlexW2969307170

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.