Evidence map›Paper›PMID 31424116›Full record

ArticleJournal of orthopaedic research : official publication of the Orthopaedic Research Society2020

Transcriptomic Analysis of Cellular Pathways in Healing Flexor Tendons of Plasminogen Activator Inhibitor 1 (PAI-1/Serpine1) Null Mice.

Margaret A T Freeberg, Anas Easa, Jacquelyn A Lillis, Danielle S W Benoit, Andre J van Wijnen, Hani A Awad

Open access · bronzeAbstract read
In one paragraph

Article in Journal of orthopaedic research : official publication of the Orthopaedic Research Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  6. PAI-1 mediates TGF-β1-induced myofibroblast activation in tenocytes via mTOR signaling.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2023
    Article
  7. Preclinical tendon and ligament models: Beyond the 3Rs (replacement, reduction, and refinement) to 5W1H (why, who, what, where, when, how).Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Margaret A T FreebergDepartment of Biomedical Engineering, University of Rochester, Rochester, New York.
Anas EasaCenter for Musculoskeletal Research, University of Rochester Medical Center, Rochester, New York.
Jacquelyn A LillisGenomics Research Center, University of Rochester Medical Center, Rochester, New York.
Danielle S W BenoitDepartment of Biomedical Engineering, University of Rochester, Rochester, New York.
Andre J van WijnenDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, Minnesota.
Hani A AwadDepartment of Biomedical Engineering, University of Rochester, Rochester, New York.ORCID 0000-0003-2197-2610
University of Rochester Medical Center · USMayo Clinic · US

Funding

Rochester Resource-Based Center for Bone, Muscle and Orthopaedic Research (ROCSTARR) (Overall Application)P30AR069655 · NIAMS · UNIVERSITY OF ROCHESTER · PI Edward M. Schwarz · 2016 to 2026
$7.8M
Molecular Control of Bone FormationR01AR049069 · NIAMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WESTENDORF, JENNIFER J · 2003 to 2021
$5.8M
Raman spectroscopic platform for transcutaneous monitoring of bone qualityR01AR070613 · NIAMS · UNIVERSITY OF ROCHESTER · PI Hani A Awad, ANDREW J BERGER · 2016 to 2026
$4.0M
Engineering scarless repair of flexor tendon injuriesR01AR056696 · NIAMS · UNIVERSITY OF ROCHESTER · PI AWAD, HANI A, BENOIT, DANIELLE S. · 2009 to 2019
$3.6M
Training in Orthopaedic Researchhttps://apps.era.nih.gov/grantfolder/viewInternalGF.era?applId=8841318&folderId=90T32AR053459 · NIAMS · UNIVERSITY OF ROCHESTER · PI ZUSCIK, MICHAEL J · 2006 to 2017
$3.4M
CSR NIH HHS P30AR069655CSR NIH HHS R01AR049069CSR NIH HHS R01AR056696CSR NIH HHS R01AR070613CSR NIH HHS T32AR053459Division of Materials Research DMR-1206219New York State Stem Cell Science Program NYSTEM IDEA-N11G-035NIAMS NIH HHS P30 AR069655NIAMS NIH HHS R01 AR049069NIAMS NIH HHS R01 AR056696NIAMS NIH HHS R01 AR070613NIAMS NIH HHS T32 AR053459
6 · The paper itself

Abstract

Injuries to flexor tendons can be complicated by fibrotic adhesions, which severely impair the function of the hand. Plasminogen activator inhibitor 1 (PAI-1/SERPINE1), a master suppressor of fibrinolysis and protease activity, is associated with adhesions. Here, we used next-generation RNA sequencing (RNA-Seq) to assess genome-wide differences in messenger RNA expression due to PAI-1 deficiency after zone II flexor tendon injury. We used the ingenuity pathway analysis to characterize molecular pathways and biological drivers associated with differentially expressed genes (DEG). Analysis of hundreds of overlapping and DEG in PAI-1 knockout (KO) and wild-type mice (C57Bl/6J) during tendon healing revealed common and distinct biological processes. Pathway analysis identified cell proliferation, survival, and senescence, as well as chronic inflammation as potential drivers of fibrotic healing and adhesions in injured tendons. Importantly, we identified the activation of PTEN signaling and the inhibition of FOXO1-associated biological processes as unique transcriptional signatures of the healing tendon in the PAI-1/Serpine1 KO mice. Further, transcriptomic differences due to the genetic deletion of PAI-1 were mechanistically linked to PI3K/Akt/mTOR, PKC, and MAPK signaling cascades. These transcriptional observations provide novel insights into the biological roles of PAI-1 in tendon healing and could identify therapeutic targets to achieve scar-free regenerative healing of tendons. © 2019 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 38:43-58, 2020.

Indexed as

TranscriptomeWound HealingAnimalsForkhead Box Protein O1High-Throughput Nucleotide SequencingMiceMice, Inbred C57BLMice, KnockoutPlasminogen Activator Inhibitor 1Protein Kinase CPTEN PhosphohydrolaseTendon InjuriesForkhead Box Protein O1Foxo1 protein, mousePlasminogen Activator Inhibitor 1Protein Kinase CPTEN PhosphohydrolasePten protein, mouseadhesionsfibrosisFOXO1ingenuity pathway analysisPAI-1PTENRNA sequencingtendon

Identifiers

PMID31424116
PMCPMC7364818
OpenAlexW2969363680

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.