Evidence map›Paper›PMID 31422911›Full record

ArticleStructure (London, England : 1993)2019

Qualitative Analyses of Polishing and Precoating FIB Milled Crystals for MicroED.

Michael W Martynowycz, Wei Zhao, Johan Hattne, Grant J Jensen, Tamir Gonen

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Unraveling atomic complexity from frozen samples.Structural dynamics (Melville, N.Y.) · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Structure of the lens MP20 mediated adhesive junction.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Benchmarking the ideal sample thickness in cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. MicroED structure of the human adenosine receptor determined from a single nanocrystal in LCP.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Michael W MartynowyczHoward Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA, USA; Departments of Biological Chemistry and Physiology, University of California Los Angeles, Los Angeles, CA, USA.
Wei ZhaoHoward Hughes Medical Institute, California Institute of Technology, Pasadena, CA, USA; Department of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Johan HattneHoward Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA, USA; Departments of Biological Chemistry and Physiology, University of California Los Angeles, Los Angeles, CA, USA.
Grant J JensenHoward Hughes Medical Institute, California Institute of Technology, Pasadena, CA, USA; Department of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Tamir GonenHoward Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA, USA; Departments of Biological Chemistry and Physiology, University of California Los Angeles, Los Angeles, CA, USA. Electronic address: tgonen@ucla.edu.

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Virus TransmissionP50AI150464 · NIAID · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2019 to 2021
$14.9M
Imaging large macromolecular complexes inside cells with electron cryotomographyR35GM122588 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI JENSEN, GRANT J · 2017 to 2020
$1.9M
NIAID NIH HHS P50 AI150464NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R35 GM122588
6 · The paper itself

Abstract

Microcrystal electron diffraction (MicroED) leverages the strong interaction between matter and electrons to determine protein structures from vanishingly small crystals. This strong interaction limits the thickness of crystals that can be investigated by MicroED, mainly due to absorption. Recent studies have demonstrated that focused ion-beam (FIB) milling can thin crystals into ideal-sized lamellae; however, it is not clear how to best apply FIB milling for MicroED. Here, the effects of polishing the lamellae, whereby the last few nanometers are milled away using a low-current gallium beam, are explored in both the platinum-precoated and uncoated samples. Our results suggest that precoating samples with a thin layer of platinum followed by polishing the crystal surfaces prior to data collection consistently led to superior results as indicated by higher signal-to-noise ratio, higher resolution, and better refinement statistics. This study lays the foundation for routine and reproducible methodology for sample preparation in MicroED.

Indexed as

Cryoelectron MicroscopyCrystallography, X-RayGalliumMicroscopy, Electron, ScanningModels, MolecularPlatinumProteinsGalliumPlatinumProteinscryoelectron microscopycryo-EMelectron crystallographyelectron diffractionFIB-SEMMicroED

Identifiers

PMID31422911
PMCPMC7145226

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.