Evidence map›Paper›PMID 31420829›Full record

ArticleVirus genes2019

Complete genomic sequence of bacteriophage P23: a novel Vibrio phage isolated from the Yellow Sea, China.

Yundan Liu, Lei Zhao, Min Wang, Qi Wang, Xinran Zhang, Yuye Han, Meiwen Wang, Tong Jiang, Hongbing Shao, Yong Jiang and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Journal of microbiology and biotechnology · 2024
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  4. Microbiology spectrum · 2024
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  11. Biological characteristics and genomic analysis of a novelFrontiers in cellular and infection microbiology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Yundan LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Lei ZhaoQing Dao Municipal Hospital, Qingdao, People's Republic of China.
Min WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China. mingwang@ouc.edu.cn.
Qi WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Xinran ZhangCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Yuye HanCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Meiwen WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Tong JiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Hongbing ShaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Yong JiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China.
Andrew McMinnInstitute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS, Australia.
Ocean University of China · CNQingdao University · CNUniversity of Tasmania · AU

Funding

Fundamental Research Funds for the Central University of Ocean University of China 201562018Fundamental Research Funds for the Central University of Ocean University of China 201762017Fundamental Research Funds for the Central University of Ocean University of China 201812002Marine Scientific and Technological Innovation Project Financially Supported 2016ASKJ14Marine Scientific and Technological Innovation Project Financially Supported 2018SDKJ0104-4Marine Scientific and Technological Innovation Project Financially Supported 2018SDKJ0406-6National Key Research and Development Program of China 2017YFA0603200National Key Research and Development Program of China 2018YFC1406704National Natural Science Foundation of China 31500339National Natural Science Foundation of China 41076088National Natural Science Foundation of China 41676178State Oceanic Administration People's republic of China GASI-02-PAC- ST-MSautState Oceanic Administration People's republic of China GASI-02-PAC-ST-MSwin
6 · The paper itself

Abstract

A novel Vibrio phage, P23, belonging to the family Siphoviridae was isolated from the surface water of the Yellow Sea, China. The complete genome of this phage was determined. A one-step growth curve showed that the latent period was approximately 30 min, the burst size was 24 PFU/cell, and the rise period was 20 min. The phage is host specific and is stable over a range of pH (5-10) and temperatures (4-65 °C). Transmission electron microscopy showed that phage P23 can be categorized into the Siphoviridae family, with an icosahedral head of 60 nm and a long noncontractile tail of 144 nm. The genome consisted of a linear, double-stranded 40.063 kb DNA molecule with 42.5% G+C content and 72 putative open reading frames (ORFs) without tRNA. The predicted ORFs were classified into six functional groups, including DNA replication, regulation and nucleotide metabolism, transcription, phage packaging, phage structure, lysis, and hypothetical proteins. The Vibrio phage P23 genome is a new marine Siphoviridae-family phage genome that provides basic information for further molecular research on interaction mechanisms between bacteriophages and their hosts.

Indexed as

PhylogenyWhole Genome SequencingBacteriophagesBase CompositionChinaGenome, ViralGenomicsMolecular Sequence AnnotationOpen Reading FramesSequence Analysis, DNASiphoviridaeVibrioBacteriophageComplete genomeSiphoviridaeVibrio

Identifiers

PMID31420829
OpenAlexW2967874512

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.