Evidence map›Paper›PMID 31420797›Full record

ArticleJournal of industrial microbiology & biotechnology2019

Adaptive mechanism of Acidithiobacillus thiooxidans CCTCC M 2012104 under stress during bioleaching of low-grade chalcopyrite based on physiological and comparative transcriptomic analysis.

Zongwei Yin, Shoushuai Feng, Yanjun Tong, Hailin Yang

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Transcriptomic Analysis of the StrainInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Review
  5. Deciphering the enigmatic PilY1 ofBiochemistry and biophysics reports · 2024
    Article
  6. Article
  7. Review
  8. Molecular Identification and Acid Stress Response of anInternational journal of molecular sciences · 2023
    Article
  9. Article
  10. Review
  11. Physiological and Transcriptional Responses ofFrontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Zongwei YinThe Key Laboratory of Industrial Biotechnology, Ministry of Education, Wuxi, People's Republic of China.
Shoushuai FengThe Key Laboratory of Industrial Biotechnology, Ministry of Education, Wuxi, People's Republic of China. fengshuaihaha@126.com.
Yanjun TongState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, People's Republic of China.
Hailin YangThe Key Laboratory of Industrial Biotechnology, Ministry of Education, Wuxi, People's Republic of China. bioprocessor123@aliyun.com.
Jiangnan University · CNMinistry of Education of the People's Republic of China · CN

Funding

Excellent Young Talents Fund Program of Higher Education Institutions of Anhui Province (CN) No. 111-2-06Key Laboratory of Industrial Biotechnology, Ministry of Education KLIB-KF201504Key Laboratory of Research on Chemistry and Physics of Optoelectronic Materials (CN) KLCCB-KF201601national first-class discipline program of Light Industry Technology and Engineering LITE2018-23National Natural Science Foundation of China No. 21606110National Natural Science Foundation of China No. 21776113National Natural Science Foundation of China No. 31530056Natural Science Foundation of Jiangsu Province No. BK20150133
6 · The paper itself

Abstract

Acidithiobacillus thiooxidans (A. thiooxidans) is often used for sulfur-bearing ores bioleaching, but its adaptive mechanism to harsh environments remains unclear. Here, we explored the adaptive mechanism of A. thiooxidans in the process of low-grade chalcopyrite bioleaching based on the physiology and comparative transcriptome analysis. It was indicated that A. thiooxidans maintains intracellular pH homeostasis by regulating unsaturated fatty acids, especially cyclopropane fatty acids, intracellular ATP, amino acid metabolism, and antioxidant factors. Comparative transcriptome analysis indicated that the key genes involved in sulfur oxidation, sor and soxABXYZ, were significantly up-regulated, generating more energy to resist extreme environmental stress by more active sulfur metabolism. Confocal laser scanning microscope analysis found that down-regulation of flagellar-related genes was likely to promote the biofilm formation. System-level understanding of leaching microorganisms under extreme stress can contribute to the evolution of these extremophiles via genetic engineering modification work, which further improves bioleaching in future.

Indexed as

Acidithiobacillus thiooxidansCopperOxidation-ReductionStress, PhysiologicalTranscriptomechalcopyriteCopperAcidithiobacillus thiooxidansConfocal laser scanning microscopepHin homeostasisPhysiological responseTranscriptome profiling

Identifiers

PMID31420797
OpenAlexW2966886289

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.