Evidence map›Paper›PMID 31420548›Full record

ArticleNature communications2019

The predominance of nucleotidyl activation in bacterial phosphonate biosynthesis.

Kyle Rice, Kissa Batul, Jacqueline Whiteside, Jayne Kelso, Monica Papinski, Edward Schmidt, Alena Pratasouskaya, Dacheng Wang, Rebecca Sullivan, Christopher Bartlett and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Late-Stage Posttranslational Assembly of Fosfazinomycins.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Kyle RiceDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0002-4332-1299
Kissa BatulDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.
Jacqueline WhitesideDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0001-8621-2888
Jayne KelsoDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0001-9388-3575
Monica PapinskiDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0001-5765-8389
Edward SchmidtDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0003-0729-5473
Alena PratasouskayaDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0002-7866-3352
Dacheng WangDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0003-4244-5131
Rebecca SullivanDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0003-0469-9544
Christopher BartlettDepartment of Biology, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0003-0013-1935
Joel T WeadgeDepartment of Biology, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0002-8020-0015
Marc W Van der KampSchool of Biochemistry, University of Bristol, Bristol, BS8 1TD, UK.ORCID http://orcid.org/0000-0002-8060-3359
Gabriel Moreno-HagelsiebDepartment of Biology, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0002-2457-4450
Michael D SuitsDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.ORCID http://orcid.org/0000-0002-2594-9162
Geoff P HorsmanDepartment of Chemistry & Biochemistry, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada. ghorsman@wlu.ca.ORCID http://orcid.org/0000-0002-2023-2349
Wilfrid Laurier University · CAUniversity of Bristol · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M026280/1
6 · The paper itself

Abstract

Phosphonates are rare and unusually bioactive natural products. However, most bacterial phosphonate biosynthetic capacity is dedicated to tailoring cell surfaces with molecules like 2-aminoethylphosphonate (AEP). Although phosphoenolpyruvate mutase (Ppm)-catalyzed installation of C-P bonds is known, subsequent phosphonyl tailoring (Pnt) pathway steps remain enigmatic. Here we identify nucleotidyltransferases in over two-thirds of phosphonate biosynthetic gene clusters, including direct fusions to ~60% of Ppm enzymes. We characterize two putative phosphonyl tailoring cytidylyltransferases (PntCs) that prefer AEP over phosphocholine (P-Cho) - a similar substrate used by the related enzyme LicC, which is a virulence factor in Streptococcus pneumoniae. PntC structural analyses reveal steric discrimination against phosphocholine. These findings highlight nucleotidyl activation as a predominant chemical logic in phosphonate biosynthesis and set the stage for probing diverse phosphonyl tailoring pathways.

Indexed as

ActinobacteriaAminoethylphosphonic AcidBacteriaBacterial ProteinsBiosynthetic PathwaysCell WallCrystallizationCrystallography, X-RayEscherichia coliN-Acylneuraminate CytidylyltransferaseNucleotidyltransferasesOrganophosphonatesPhospholipidsPhosphorylcholinePhosphotransferases (Phosphomutases)PolysaccharidesAminoethylphosphonic AcidBacterial ProteinsN-Acylneuraminate CytidylyltransferaseNucleotidyltransferasesOrganophosphonatesphosphoenolpyruvate mutasePhospholipidsphosphonolipidsPhosphorylcholinePhosphotransferases (Phosphomutases)Polysaccharides

Identifiers

PMID31420548
PMCPMC6697681
OpenAlexW2967617806

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.