Evidence map›Paper›PMID 31420539›Full record

ArticleNature communications2019

Single cell transcriptome analysis of developing arcuate nucleus neurons uncovers their key developmental regulators.

Christian Huisman, Hyeyoung Cho, Olivier Brock, Su Jeong Lim, Sung Min Youn, Younjung Park, Sangsoo Kim, Soo-Kyung Lee, Alessio Delogu, Jae W Lee

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 73 citations in OpenAlex.

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  15. Frontiers in endocrinology · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Christian HuismanNeuroscience Section, Papé Family Pediatric Research Institute, Oregon Health and Science University, Portland, OR, 97239, USA.
Hyeyoung ChoNeuroscience Section, Papé Family Pediatric Research Institute, Oregon Health and Science University, Portland, OR, 97239, USA.
Olivier BrockDepartment of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, SE5 9RS, UK.
Su Jeong LimDepartment of Bioinformatics and Life Science, Soongsil University, Seoul, Korea.ORCID http://orcid.org/0000-0002-5245-2282
Sung Min YounDepartment of Bioinformatics and Life Science, Soongsil University, Seoul, Korea.ORCID http://orcid.org/0000-0001-6383-8546
Younjung ParkNeuroscience Section, Papé Family Pediatric Research Institute, Oregon Health and Science University, Portland, OR, 97239, USA.
Sangsoo KimDepartment of Bioinformatics and Life Science, Soongsil University, Seoul, Korea.
Soo-Kyung LeeNeuroscience Section, Papé Family Pediatric Research Institute, Oregon Health and Science University, Portland, OR, 97239, USA.ORCID http://orcid.org/0000-0002-1745-256X
Alessio DeloguDepartment of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, SE5 9RS, UK. alessio.delogu@kcl.ac.uk.
Jae W LeeNeuroscience Section, Papé Family Pediatric Research Institute, Oregon Health and Science University, Portland, OR, 97239, USA. jlee269@buffalo.edu.ORCID http://orcid.org/0000-0001-7439-643X
Oregon Health & Science University · USSoongsil University · KRKing's College London · GB

Funding

LIM-HD/bHLH Combinatorial Code in MotoneuronsR01NS054941 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEE, SOO-KYUNG · 2006 to 2015
$4.3M
Regulation Code by Nuclear Receptor Coactivator ASC-2R01DK064678 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEE, JAE W · 2004 to 2016
$4.3M
FoxG1-directed Gene Network in Forebrain Development and FoxG1 SyndromeR01NS100471 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LEE, SOO-KYUNG · 2017 to 2021
$2.4M
Transcriptional Regulators of Motor Columnar SpecificationR01NS111760 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LEE, SOO-KYUNG · 2019 to 2023
$2.0M
Gene regulatory networks in spinal cord developmentR56NS054941 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEE, SOO-KYUNG · 2016 to 2016
$539k
Roles of MLL4-complex in development of hypothalamic arcuate neuronsR56DK118912 · NIDDK · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LEE, JAE W, LEE, SOO-KYUNG · 2019 to 2019
$116k
Biotechnology and Biological Sciences Research Council BB/L020068/1NIDDK NIH HHS R01 DK064678NIDDK NIH HHS R56 DK118912NINDS NIH HHS R01 NS054941NINDS NIH HHS R01 NS100471NINDS NIH HHS R01 NS111760NINDS NIH HHS R56 NS054941
6 · The paper itself

Abstract

Despite the crucial physiological processes governed by neurons in the hypothalamic arcuate nucleus (ARC), such as growth, reproduction and energy homeostasis, the developmental pathways and regulators for ARC neurons remain understudied. Our single cell RNA-seq analyses of mouse embryonic ARC revealed many cell type-specific markers for developing ARC neurons. These markers include transcription factors whose expression is enriched in specific neuronal types and often depleted in other closely-related neuronal types, raising the possibility that these transcription factors play important roles in the fate commitment or differentiation of specific ARC neuronal types. We validated this idea with the two transcription factors, Foxp2 enriched for Ghrh-neurons and Sox14 enriched for Kisspeptin-neurons, using Foxp2- and Sox14-deficient mouse models. Taken together, our single cell transcriptome analyses for the developing ARC uncovered a panel of transcription factors that are likely to form a gene regulatory network to orchestrate fate specification and differentiation of ARC neurons.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsArcuate Nucleus of HypothalamusForkhead Transcription FactorsGene Expression ProfilingGrowth Hormone-Releasing HormoneKisspeptinsMiceMice, KnockoutNeurogenesisNeuronsRepressor ProteinsSingle-Cell AnalysisSOXB2 Transcription FactorsForkhead Transcription FactorsFoxp2 protein, mouseGrowth Hormone-Releasing HormoneKisspeptinsRepressor ProteinsSox14 protein, mouseSOXB2 Transcription Factors

Identifiers

PMID31420539
PMCPMC6697706
OpenAlexW2968993257

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.