Evidence map›Paper›PMID 31419079›Full record

ArticleMolecular genetics & genomic medicine2019

Gene expression profiles and bioinformatics analysis of insulin-like growth factor-1 promotion of osteogenic differentiation.

Yashuai Yuan, Ruimeng Duan, Baolin Wu, Wei Huang, Xiuzhi Zhang, Mingjia Qu, Tao Liu, Xiaobing Yu

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yashuai YuanDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.
Ruimeng DuanDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.
Baolin WuDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.
Wei HuangDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.
Xiuzhi ZhangDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.
Mingjia QuDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.
Tao LiuDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.
Xiaobing YuDepartment of Orthopaedics, Affiliated Zhongshan Hospital of Dalian University, Dalian, China.ORCID 0000-0001-5119-4122
Affiliated Zhongshan Hospital of Dalian University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInsulin-like growth factor-1 (IGF-1) promotes osteoblast differentiation and mineralization. The objective of this study was to investigate the effects of IGF-1 on proliferation, mineralization, alkaline phosphatase (ALP) synthesis, and gene expression of osteoblast differentiation in MC3T3-E1 osteoblasts cells, and to explore gene expression profiling differential genes.

methodsMC3T3-E1 osteoblasts cells were cultured in medium with or without IGF-1. The ALP assay was employed to determine the osteoblast mineralization, and Alizarin red S to stain for calcium deposits, which were the indicators of mature osteocytes. The living cell number was assessed by the Cell Counting Kit-8 method. RNA-seq analysis was applied to identify genes that were differentially expressed in with or without IGF-1 as well as genes that varied between these two groups. The expression of osteogenic marker genes was determined by quantitative real-time polymerase chain reaction (qRT-PCR) and western blot analysis.

resultThe cell number of osteoblasts exposed to IGF-1 at 200 μg/L significantly increased compared with the control group. The ALP activity in IGF-1-treated cells was higher than that in the control group. IGF-1 can increase ALP synthesis in osteoblasts in vitro. RNA-seq analysis showed that 677 triggered differentially expressed genes by IGF, of which 383 genes were downregulated and 294 genes were upregulated. Gene ontology (GO) analysis showed that IGF-1 caused a significant change in gene expression patterns.

conclusionsThis result suggested that IGF-1 could probably promote the synthesis of organic matrix and mineralize action of bone. Osteogenic-related genes (DMP1, PHEX, SOST, BMP2, RUNX2, OPN, and OCN) were significantly upregulated both in GO analysis and in pathway analysis to perform qRT-PCR. Western blot analysis demonstrated that the Notch pathway was highly upregulated in MC3T3-E1 cells.

Indexed as

Calcification, PhysiologicCell DifferentiationTranscriptomeAlkaline PhosphataseAnimalsCell LineCell ProliferationInsulin-Like Growth Factor IMiceOsteoblastsReceptors, NotchAlkaline PhosphataseInsulin-Like Growth Factor IReceptors, NotchIGF-1MC3T3-E1 cellsProliferationRNA-seq

Identifiers

PMID31419079
PMCPMC7082822
OpenAlexW2967074347

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.