Evidence map›Paper›PMID 31418107›Full record

ArticleJournal of assisted reproduction and genetics2019

Duplications in 19p13.3 are associated with male infertility.

Vertika Singh, Renu Bala, Arijit Chakraborty, Singh Rajender, Sameer Trivedi, Kiran Singh

Abstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. ATP5D Is a Potential Biomarker for Male Fertility.Oxidative medicine and cellular longevity · 2023
    Article
  6. Article
  7. Article
  8. Repetitive DNA Sequences in the Human Y Chromosome and Male Infertility.Frontiers in cell and developmental biology · 2022
    Review
  9. Article
  10. Review
  11. Sertoli cell-only syndrome: etiology and clinical management.Journal of assisted reproduction and genetics · 2021
    Review
  12. Article
  13. Reply to: MIDN locus structural variants and Parkinson's disease risk.Annals of clinical and translational neurology · 2020
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Vertika SinghDepartment of Molecular & Human Genetics, Banaras Hindu University, Varanasi, 221005, India.
Renu BalaDepartment of Molecular & Human Genetics, Banaras Hindu University, Varanasi, 221005, India.
Arijit ChakrabortyDepartment of Molecular & Human Genetics, Banaras Hindu University, Varanasi, 221005, India.
Singh RajenderDivision of Endocrinology, Central Drug Research Institute, Lucknow, India.
Sameer TrivediDepartment of Urology, Institute of Medical Sciences, Banaras Hindu University, Varanasi, 221005, India.
Kiran SinghDepartment of Molecular & Human Genetics, Banaras Hindu University, Varanasi, 221005, India. singhk4@rediffmail.com.ORCID http://orcid.org/0000-0002-2592-6534
Banaras Hindu University · INCentral Drug Research Institute · INInstitute of Medical Sciences · IN

Funding

Board of Research in Nuclear Sciences 2013/37B/27/BRNS
6 · The paper itself

Abstract

purposeTo identify genomic imbalances and candidate loci in idiopathic male infertility.

methodsAffymetrix CytoScan 750K Array was used to analyze genomic imbalances and candidate loci in 34 idiopathic infertile cases of different phenotypes (hypo-spermatogenesis, n = 8; maturation arrest, n = 7; and Sertoli cell-only syndrome, n = 13, severe oligozoospermia, n = 6, and 10 normozoospermic fertile men). Ten ethnically matched controls were screened for comparison.

resultsThe cytogenetic array analysis detected a genomic gain at the 19p13.3 region in 9 (26.47%) cases, with the highest frequency in patients with Sertoli cell-only syndrome (SCOS) (38%). Its complete absence in the control group suggests its likely pathogenic nature. In addition to Y-classical, micro, and partial deletions, the duplication in 19p13.3 could serve as a unique biomarker for evaluation of infertility risk. The common region across the individuals harboring the duplication identified STK11, ATP5D, MIDN, CIRBP, and EFNA2 genes which make them strong candidates for further investigations. The largest duplicated region identified in this study displayed a major network of 7 genes, viz., CIRBP, FSTL3, GPX4, GAMT, KISS1R, STK11, and PCSK4, associated with reproductive system development and function. The role of chance was ruled out by screening of ethnically matched controls.

conclusionThe result clearly indicates the significance of 19p13.3 duplication in infertile men with severe testicular phenotypes. The present study underlines the utility and significance of whole genomic analysis in the cases of male infertility which goes undiagnosed due to limitations in the conventional cytogenetic techniques and for identifying genes that are essential for spermatogenesis.

Indexed as

AdultChromosome AberrationsChromosome DuplicationChromosomes, Human, Pair 19DNA Copy Number VariationsGenomic InstabilityHumansInfertility, MaleMaleMiddle AgedSertoli Cell-Only SyndromeSpermatogenesisCopy number variationsCytogenetic microarrayGenomic imbalancesInfertilitySpermatogenesis

Identifiers

PMID31418107
PMCPMC6823329
OpenAlexW2968886306

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.