Evidence map›Paper›PMID 31418050›Full record

ArticleAnalytical and bioanalytical chemistry2019

Fourier transform infrared spectroscopic imaging of colon tissues: evaluating the significance of amide I and C-H stretching bands in diagnostic applications with machine learning.

Cai Li Song, Martha Z Vardaki, Robert D Goldin, Sergei G Kazarian

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Evaluation of Proteomic and Lipidomic Changes inInternational journal of molecular sciences · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Cai Li SongDepartment of Chemical Engineering, South Kensington Campus, Imperial College London, London, SW7 2AZ, UK.
Martha Z VardakiMichael Smith Laboratories, The University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
Robert D GoldinDepartment of Cellular Pathology, St. Mary's Campus, Imperial College London, W2 1NY, London, UK.
Sergei G KazarianDepartment of Chemical Engineering, South Kensington Campus, Imperial College London, London, SW7 2AZ, UK. s.kazarian@imperial.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fourier transform infrared (FTIR) spectroscopic imaging of colon biopsy tissues in transmission combined with machine learning for the classification of different stages of colon malignancy was carried out in this study. Two different approaches, an optical and a computational one, were applied for the elimination of the scattering background during the measurements and compared with the results of the machine learning model without correction for the scattering. Several different data processing pathways were implemented in order to obtain a high accuracy of the prediction model. This study demonstrates, for the first time, that C-H stretching and amide I bands are of little to no significance in the classification of the colon malignancy, based on the Gini importance values by random forest (RF). The best prediction outcome is found when supervised RF classification was carried out in the fingerprint region of the spectral data between 1500 and 1000 cm

Indexed as

ColonColonic NeoplasmsMachine LearningPrognosisSpectroscopy, Fourier Transform InfraredColon polyps and cancerCorrecting lens approachFourier transform infrared spectroscopic imagingK-means clusteringMachine learningRandom forest supervised classification

Identifiers

PMID31418050
PMCPMC6834539

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.