Evidence map›Paper›PMID 31417541›Full record

ArticleFrontiers in immunology2019

Single T Cell Sequencing Demonstrates the Functional Role of

Jason A Carter, Jonathan B Preall, Kristina Grigaityte, Stephen J Goldfless, Eric Jeffery, Adrian W Briggs, Francois Vigneault, Gurinder S Atwal

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 98 citations in OpenAlex.

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  18. Limits on inferring T cell specificity from partial information.Proceedings of the National Academy of Sciences of the United States of America · 2024
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jason A CarterDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, United States.
Jonathan B PreallCold Spring Harbor Laboratory, Cold Spring Harbor, NY, United States.
Kristina GrigaityteCold Spring Harbor Laboratory, Cold Spring Harbor, NY, United States.
Stephen J GoldflessJuno Therapeutics, Seattle, WA, United States.
Eric JefferyJuno Therapeutics, Seattle, WA, United States.
Adrian W BriggsJuno Therapeutics, Seattle, WA, United States.
Francois VigneaultJuno Therapeutics, Seattle, WA, United States.
Gurinder S AtwalCold Spring Harbor Laboratory, Cold Spring Harbor, NY, United States.
Cold Spring Harbor Laboratory · USStony Brook University · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
Next Generation DNA SequencerS10OD020122 · OD · COLD SPRING HARBOR LABORATORY · PI MCCOMBIE, WILLIAM RICHARD · 2015 to 2015
$523k
NCI NIH HHS P30 CA045508NIGMS NIH HHS T32 GM008444NIH HHS S10 OD020122
6 · The paper itself

Abstract

Although structural studies of individual T cell receptors (TCRs) have revealed important roles for both the α and β chain in directing MHC and antigen recognition, repertoire-level immunogenomic analyses have historically examined the β chain alone. To determine the amount of useful information about TCR repertoire function encoded within αβ pairings, we analyzed paired TCR sequences from nearly 100,000 unique CD4

Indexed as

Complementarity Determining RegionsMachine LearningReceptors, Antigen, T-Cell, alpha-betaSequence Analysis, ProteinAntigensCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesHumansAntigensComplementarity Determining RegionsReceptors, Antigen, T-Cell, alpha-betaCD4 and CD8 T cell repertoiresmachine learningsingle-cell sequencingTCR repertoire diversityTCR–T cell receptor

Identifiers

PMID31417541
PMCPMC6684766
OpenAlexW2949635314

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.