Evidence map›Paper›PMID 31417538›Full record

ArticleFrontiers in microbiology2019

RNA-Seq Analysis Reveals Genes Related to Photoreception, Nutrient Uptake, and Toxicity in a Noxious Red-Tide Raphidophyte

Tomoyuki Shikata, Fumio Takahashi, Hiroyo Nishide, Shuji Shigenobu, Yasuhiro Kamei, Setsuko Sakamoto, Kouki Yuasa, Yoshitaka Nishiyama, Yasuhiro Yamasaki, Ikuo Uchiyama

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Tomoyuki ShikataNational Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research and Education Agency, Hatsukaiti, Japan.
Fumio TakahashiDepartment of Biotechnology, College of Life Sciences, Ritsumeikan University, Kusatsu, Japan.
Hiroyo NishideLaboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Japan.
Shuji ShigenobuCore Research Facilities, National Institute for Basic Biology, Okazaki, Japan.
Yasuhiro KameiCore Research Facilities, National Institute for Basic Biology, Okazaki, Japan.
Setsuko SakamotoNational Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research and Education Agency, Hatsukaiti, Japan.
Kouki YuasaDepartment of Biochemistry and Molecular Biology, Graduate School of Science and Engineering, Saitama University, Sakura-ku, Japan.
Yoshitaka NishiyamaDepartment of Biochemistry and Molecular Biology, Graduate School of Science and Engineering, Saitama University, Sakura-ku, Japan.
Yasuhiro YamasakiLaboratory of Environmental Biology, Department of Applied Aquabiology, National Fisheries University, Fisheries Research and Education Agency, Yamaguchi, Japan.
Ikuo UchiyamaLaboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Japan.
National Institute for Basic Biology · JPJapan Fisheries Research and Education Agency · JPSaitama University · JPNational Fisheries University · JPNational Institutes of Natural Sciences · JPRitsumeikan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aquaculture industries are under threat from noxious red tides, but harm can be mitigated by precautions such as early harvesting and restricting fish feeding to just before the outbreak of a red tide. Therefore, accurate techniques for forecasting red-tide outbreaks are strongly needed. Omics analyses have the potential to expand our understanding of the eco-physiology of these organisms at the molecular level, and to facilitate identification of molecular markers for forecasting their population dynamics and occurrence of damages to fisheries. Red tides of marine raphidophytes, especially

Indexed as

aureochromecryptochromeharmful algaeNADPH-oxidasephytochromepigment biosynthesistranscriptometransporter

Identifiers

PMID31417538
PMCPMC6685483
OpenAlexW2958291045

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.