Evidence map›Paper›PMID 31417134›Full record

ArticleScientific reports2019

Transcriptional alterations reveal Bacillus amyloliquefaciens-rice cooperation under salt stress.

Puneet Singh Chauhan, Charu Lata, Shalini Tiwari, Abhishek Singh Chauhan, Shashank Kumar Mishra, Lalit Agrawal, Debasis Chakrabarty, Chandra Shekhar Nautiyal

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 120 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Halotolerant plant growth-promoting bacteriaJournal of Zhejiang University. Science. B · 2026
    Article
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  16. Plants (Basel, Switzerland) · 2022
    Review
  17. Article
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  19. Synergistic action ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Puneet Singh ChauhanCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India.
Charu LataCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India.
Shalini TiwariCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India.ORCID http://orcid.org/0000-0001-9380-5286
Abhishek Singh ChauhanCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India.
Shashank Kumar MishraCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India.
Lalit AgrawalCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India.
Debasis ChakrabartyCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India.ORCID http://orcid.org/0000-0003-4795-199X
Chandra Shekhar NautiyalCSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India. csnnbri@yahoo.com.
National Botanical Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Bacillus amyloliquefaciens-SN13 and model crop rice (Oryza sativa) were chosen to understand the complex regulatory networks that govern plant-PGPR interaction under salt stress. During stress, inoculation with SN13 significantly increased biomass, relative water content, proline and total soluble sugar in rice while decreased lipid peroxidation and electrolyte leakage. Extensive alterations in gene expression were also observed in rice root transcriptome under stress in the presence of SN13. Rhizobacteria induced changes in expression of a considerable number of photosynthesis, hormone, and stress-responsive genes, in addition to cell-wall and lipid metabolism-related genes under salt stress as compared to salt stress or SN13 inoculation alone, indicating its potential role in reducing the harmful effects of salinity. To validate RNA-seq data, qRT-PCR was performed for selected differentially expressed genes representing various functional categories including metabolism, regulation, stress-response, and transporters. Results indicate qualitative and quantitative differences between roots responses to SN13 under stressed and unstressed conditions. Functional expressions of OsNAM and OsGRAM in yeast showed enhanced tolerance to various abiotic stresses, indicating crucial SN13-rice interaction in imparting beneficial effects under stress. This is first detailed report on understanding molecular mechanism underlying beneficial plant-microbe interaction in any economically important model crop plant under abiotic stress.

Indexed as

Transcription, GeneticBacillus amyloliquefaciensChlorophyllGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGenes, PlantMetabolic Networks and PathwaysModels, BiologicalOryzaProlineReproducibility of ResultsRNA, MessengerSaccharomyces cerevisiaeSalt StressSodium ChlorideChlorophyllProlineRNA, MessengerSodium ChlorideSugarsWater

Identifiers

PMID31417134
PMCPMC6695486
OpenAlexW2967916237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.