Evidence map›Paper›PMID 31417084›Full record

ArticleNature communications2019

The structure of a polygamous repressor reveals how phage-inducible chromosomal islands spread in nature.

J Rafael Ciges-Tomas, Christian Alite, Suzanne Humphrey, J Donderis, Janine Bowring, Xavier Salvatella, José R Penadés, Alberto Marina

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Genetics, ecology and evolution of phage satellites.Nature reviews. Microbiology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

J Rafael Ciges-TomasInstituto de Biomedicina de Valencia (IBV-CSIC) and CIBER de Enfermedades Raras (CIBERER), Valencia, 46010, Spain.ORCID http://orcid.org/0000-0003-2647-3052
Christian AliteInstituto de Biomedicina de Valencia (IBV-CSIC) and CIBER de Enfermedades Raras (CIBERER), Valencia, 46010, Spain.
Suzanne HumphreyInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8TA, UK.ORCID http://orcid.org/0000-0002-9893-3209
J DonderisInstituto de Biomedicina de Valencia (IBV-CSIC) and CIBER de Enfermedades Raras (CIBERER), Valencia, 46010, Spain.
Janine BowringInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8TA, UK.
Xavier SalvatellaICREA and Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08010, Spain.ORCID http://orcid.org/0000-0002-8371-4185
José R PenadésInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8TA, UK. JoseR.Penades@glasgow.ac.uk.ORCID http://orcid.org/0000-0002-6439-5262
Alberto MarinaInstituto de Biomedicina de Valencia (IBV-CSIC) and CIBER de Enfermedades Raras (CIBERER), Valencia, 46010, Spain. amarina@ibv.csic.es.ORCID http://orcid.org/0000-0002-1334-5273
Centre for Biomedical Network Research on Rare Diseases · ESUniversity of Glasgow · GBInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

Biotechnology and Biological Sciences Research Council BB/N002873/1Biotechnology and Biological Sciences Research Council BB/S003835/1Medical Research Council MC_PC_17160Medical Research Council MR/M003876/1Medical Research Council MR/S00940X/1Wellcome Trust
6 · The paper itself

Abstract

Stl is a master repressor encoded by Staphylococcus aureus pathogenicity islands (SaPIs) that maintains integration of these elements in the bacterial chromosome. After infection or induction of a resident helper phage, SaPIs are de-repressed by specific interactions of phage proteins with Stl. SaPIs have evolved a fascinating mechanism to ensure their promiscuous transfer by targeting structurally unrelated proteins performing identically conserved functions for the phage. Here we decipher the molecular mechanism of this elegant strategy by determining the structure of SaPIbov1 Stl alone and in complex with two structurally unrelated dUTPases from different S. aureus phages. Remarkably, SaPIbov1 Stl has evolved different domains implicated in DNA and partner recognition specificity. This work presents the solved structure of a SaPI repressor protein and the discovery of a modular repressor that acquires multispecificity through domain recruiting. Our results establish the mechanism that allows widespread dissemination of SaPIs in nature.

Indexed as

Biological CoevolutionCrystallography, X-RayDNA-Binding ProteinsGenomic IslandsModels, MolecularStaphylococcus aureusStaphylococcus PhagesDNA-Binding Proteins

Identifiers

PMID31417084
PMCPMC6695447
OpenAlexW2968837425

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.