Evidence map›Paper›PMID 31415753›Full record

ArticleCell host & microbe2019

Modular HIV-1 Capsid Assemblies Reveal Diverse Host-Capsid Recognition Mechanisms.

Brady J Summers, Katherine M Digianantonio, Sarah S Smaga, Pei-Tzu Huang, Kaifeng Zhou, Eva E Gerber, Wei Wang, Yong Xiong

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
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  6. Viral oncogenesis in cancer: from mechanisms to therapeutics.Signal transduction and targeted therapy · 2025
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Capsid-host interactions for HIV-1 ingress.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  13. Review
  14. The capsid lattice engages a bipartite NUP153 motif to mediate nuclear entry of HIV-1 cores.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Brady J SummersDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Katherine M DigianantonioDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Sarah S SmagaDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Pei-Tzu HuangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Kaifeng ZhouDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Eva E GerberDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Wei WangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Yong XiongDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA. Electronic address: yong.xiong@yale.edu.
Yale University · US

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ENGELMAN, ALAN N. · 2007 to 2018
$48.1M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
INTERDISCIPLINARY IMMUNOLOGY TRAINING PROGRAMT32AI007019 · NIAID · YALE UNIVERSITY · PI Carrie L. Lucas, David G. Schatz · 1985 to 2026
$14.4M
Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2019 to 2021
$14.1M
PREDOCTORAL PROGRAM IN BIOPHYSICST32GM008283 · NIGMS · YALE UNIVERSITY · PI XIONG, YONG · 1988 to 2022
$10.5M
Predoctoral Training Program in VirologyT32AI055403 · NIAID · YALE UNIVERSITY · PI KUMAR, PRITI, MOTHES, WALTHER H · 2003 to 2024
$3.6M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
NCRR NIH HHS S10 RR029205NIAID NIH HHS P50 AI150481NIAID NIH HHS T32 AI007019NIAID NIH HHS T32 AI055403NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P50 GM082251NIGMS NIH HHS T32 GM008283NIH HHS S10 OD021527
6 · The paper itself

Abstract

The HIV-1 capsid is an ordered protein shell that houses the viral genome during early infection. Its expansive surface consists of an ordered and interfacing array of capsid protein hexamers and pentamers that are recognized by numerous cellular proteins. Many of these proteins recognize specific, assembled capsid interfaces not present in unassembled capsid subunits. We used protein-engineering tools to capture diverse capsid assembly intermediates. We built a repertoire of capsid assemblies (ranging from two to 42 capsid protein molecules) that recreate the various surfaces in infectious capsids. These assemblies reveal unique capsid-targeting mechanisms for each of the anti-HIV factors, TRIMCyp, MxB, and TRIM5α, linked to inhibition of virus uncoating and nuclear entry, as well as the HIV-1 cofactor FEZ1 that facilitates virus intracellular trafficking. This capsid assembly repertoire enables elucidation of capsid recognition modes by known capsid-interacting factors, identification of new capsid-interacting factors, and potentially, development of capsid-targeting therapeutics.

Indexed as

AnimalsAnti-HIV AgentsAntiviral Restriction FactorsCapsidCapsid ProteinsCarrier ProteinsHIV-1HumansMacaca fascicularisMacaca mulattaMyxovirus Resistance ProteinsProtein BindingProtein DomainsProtein EngineeringProtein Interaction Domains and MotifsRecombinant Fusion ProteinsAnti-HIV AgentsAntiviral Restriction FactorsCapsid ProteinsCarrier ProteinsMX2 protein, humanMyxovirus Resistance ProteinsRecombinant Fusion ProteinsTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein LigasescapsidHIVMx2MxBprotein designrestriction factorTRIM5alphaTRIM5αTRIMCypvirus

Identifiers

PMID31415753
PMCPMC6777739
OpenAlexW2968050865

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.