Evidence map›Paper›PMID 31414984›Full record

ArticleeLife2019

Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory network.

Yamila N Torres Cleuren, Chee Kiang Ewe, Kyle C Chipman, Emily R Mears, Cricket G Wood, Coco Emma Alma Al-Alami, Melissa R Alcorn, Thomas L Turner, Pradeep M Joshi, Russell G Snell and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Natural cryptic variation in epigenetic modulation of an embryonic gene regulatory network.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 3 countries.

Yamila N Torres CleurenDepartment of MCD Biology, University of California, Santa Barbara, Santa Barbara, United States.ORCID 0000-0003-2218-7243
Chee Kiang EweDepartment of MCD Biology, University of California, Santa Barbara, Santa Barbara, United States.ORCID 0000-0003-1973-1308
Kyle C ChipmanDepartment of MCD Biology, University of California, Santa Barbara, Santa Barbara, United States.
Emily R MearsSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.
Cricket G WoodDepartment of MCD Biology, University of California, Santa Barbara, Santa Barbara, United States.
Coco Emma Alma Al-AlamiSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.
Melissa R AlcornDepartment of MCD Biology, University of California, Santa Barbara, Santa Barbara, United States.
Thomas L TurnerDepartment of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, Santa Barbara, United States.
Pradeep M JoshiDepartment of MCD Biology, University of California, Santa Barbara, Santa Barbara, United States.ORCID 0000-0002-4220-0559
Russell G SnellSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.
Joel H RothmanDepartment of MCD Biology, University of California, Santa Barbara, Santa Barbara, United States.ORCID 0000-0002-6844-1377
University of California, Santa Barbara · USUniversity of Auckland · NZ

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Developmental reprogramming and transorganogenesisR01HD081266 · NICHD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI Joel H. Rothman · 2015 to 2026
$3.0M
Plasticity in an embryonic gene regulatory networkR01HD082347 · NICHD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI ROTHMAN, JOEL H. · 2015 to 2019
$1.5M
NICHD NIH HHS R01 HD081266NICHD NIH HHS R01 HD082347NIH HHS 1R01HD081266NIH HHS 1R01HD082347NIH HHS P40 OD010440
6 · The paper itself

Abstract

Innovations in metazoan development arise from evolutionary modification of gene regulatory networks (GRNs). We report widespread cryptic variation in the requirement for two key regulatory inputs, SKN-1/Nrf2 and MOM-2/Wnt, into the

Indexed as

Gene Expression Regulation, DevelopmentalGene Regulatory NetworksAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDNA-Binding ProteinsGenetic VariationIntracellular Signaling Peptides and ProteinsProgranulinsTranscription FactorsWnt ProteinsCaenorhabditis elegans ProteinsDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsMOM-2 protein, C elegansProgranulinsskn-1 protein, C elegansTranscription FactorsWnt ProteinsC. eleganscryptic variationdevelopmentdevelopmental biologygeneticsgenomicsgenotype-by-sequencingGRNGWASSKN-1

Identifiers

PMID31414984
PMCPMC6754231
OpenAlexW2967527867

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.