Evidence map›Paper›PMID 31413325›Full record

ArticleScientific data2019

HENA, heterogeneous network-based data set for Alzheimer's disease.

Elena Sügis, Jerome Dauvillier, Anna Leontjeva, Priit Adler, Valerie Hindie, Thomas Moncion, Vincent Collura, Rachel Daudin, Yann Loe-Mie, Yann Herault and 8 more

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
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  3. Serum proteomics revealsmedRxiv : the preprint server for health sciences · 2023
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  17. Multi-modal intermediate integrative methods in neuropsychiatric disorders: A review.Computational and structural biotechnology journal · 2022
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 6 countries.

Elena SügisQuretec Ltd., Ülikooli 6a, 51003, Tartu, Estonia.
Jerome DauvillierSwiss Institute of Bioinformatics, Vital-IT group, Unil Quartier Sorge, Genopode building, CH-1015, Lausanne, Switzerland.
Anna LeontjevaCSIRO Data 61, 5/13 Garden St, Eveleigh, NSW, 2015, Australia.
Priit AdlerQuretec Ltd., Ülikooli 6a, 51003, Tartu, Estonia.
Valerie HindieHybrigenics SA, 3-5 Impasse Reille, 75014, Paris, France.
Thomas MoncionHybrigenics SA, 3-5 Impasse Reille, 75014, Paris, France.
Vincent ColluraHybrigenics SA, 3-5 Impasse Reille, 75014, Paris, France.
Rachel DaudinInstitut national de la santé et de la recherche médicale, INSERM U894 2 ter rue d'Alésia, 75014, Paris, France.
Yann Loe-Mie(Epi)genomics of Animal Development Unit, Institut Pasteur, CNRS UMR3738, Paris, 75015, France.
Yann HeraultCentre Européen de Recherche en Biologie et Médecine, 1 rue Laurent Fries, 67404, Illkirch, France.ORCID http://orcid.org/0000-0001-7049-6900
Jean-Charles LambertInstitut Pasteur de Lille, UMR 744 1 rue du Pr. Calmette BP 245, 59019, Lille cedex, France.ORCID http://orcid.org/0000-0003-0829-7817
Henning HermjakobEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, CB10 1SD, Hinxton, United Kingdom.ORCID http://orcid.org/0000-0001-8479-0262
Tal PupkoGeorge S. Wise Faculty of Life Sciences, School of Molecular Cell Biology and Biotechnology, Tel Aviv University, P.O. Box 39040, 6997801, Tel Aviv, Israel.
Jean-Christophe RainHybrigenics SA, 3-5 Impasse Reille, 75014, Paris, France.
Ioannis XenariosCenter for Integrative Genomics University of Lausanne, Genopode, 1015, Lausanne, Switzerland.
Jaak ViloQuretec Ltd., Ülikooli 6a, 51003, Tartu, Estonia.
Michel SimonneauInstitut national de la santé et de la recherche médicale, INSERM U894 2 ter rue d'Alésia, 75014, Paris, France. michel.simonneau@ens-paris-saclay.fr.
Hedi PetersonQuretec Ltd., Ülikooli 6a, 51003, Tartu, Estonia. peterson@quretec.com.ORCID http://orcid.org/0000-0001-9951-5116
Hybrigenics (France) · FRQuretec (Estonia) · EESIB Swiss Institute of Bioinformatics · CHUniversité Paris-Sud · FRCentre National de la Recherche Scientifique · FRCommonwealth Scientific and Industrial Research Organisation · AUEuropean Bioinformatics Institute · GBInstitut de génétique et de biologie moléculaire et cellulaire · FRInstitut Pasteur · FRTel Aviv University · IL

Funding

EC | EC Seventh Framework Programm | FP7 Health (FP7-HEALTH - Specific Programme "Cooperation": Health) 305299EC | European Regional Development Fund (Europski Fond za Regionalni Razvoj) EXCITEEesti Teadusagentuur (Estonian Research Council) IUT34-4Eesti Teadusagentuur (Estonian Research Council) PSG59
6 · The paper itself

Abstract

Alzheimer's disease and other types of dementia are the top cause for disabilities in later life and various types of experiments have been performed to understand the underlying mechanisms of the disease with the aim of coming up with potential drug targets. These experiments have been carried out by scientists working in different domains such as proteomics, molecular biology, clinical diagnostics and genomics. The results of such experiments are stored in the databases designed for collecting data of similar types. However, in order to get a systematic view of the disease from these independent but complementary data sets, it is necessary to combine them. In this study we describe a heterogeneous network-based data set for Alzheimer's disease (HENA). Additionally, we demonstrate the application of state-of-the-art graph convolutional networks, i.e. deep learning methods for the analysis of such large heterogeneous biological data sets. We expect HENA to allow scientists to explore and analyze their own results in the broader context of Alzheimer's disease research.

Indexed as

Alzheimer DiseaseDeep LearningEpistasis, GeneticGene ExpressionHumansProtein Interaction MappingTwo-Hybrid System Techniques

Identifiers

PMID31413325
PMCPMC6694132
OpenAlexW2961517618

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.