Evidence map›Paper›PMID 31413301›Full record

ArticleNature communications2019

Dissecting the heterogeneity of DENV vaccine-elicited cellular immunity using single-cell RNA sequencing and metabolic profiling.

Adam T Waickman, Kaitlin Victor, Tao Li, Kristin Hatch, Wiriya Rutvisuttinunt, Carey Medin, Benjamin Gabriel, Richard G Jarman, Heather Friberg, Jeffrey R Currier

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
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  5. Review
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  7. Dengue and severe dengue.Clinical microbiology reviews · 2025
    Review
  8. Review
  9. Article
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  20. In-silico generation of high-dimensional immune response data in patients using a deep neural network.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Adam T WaickmanViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA. adam.t.waickman.ctr@mail.mil.
Kaitlin VictorViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Tao LiViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Kristin HatchViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Wiriya RutvisuttinuntViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Carey MedinDepartment of Cell and Molecular Biology, Institute for Immunology and Informatics, University of Rhode Island, Providence, RI, USA.
Benjamin GabrielDepartment of Cell and Molecular Biology, Institute for Immunology and Informatics, University of Rhode Island, Providence, RI, USA.ORCID http://orcid.org/0000-0003-0762-9082
Richard G JarmanViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Heather FribergViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA.ORCID http://orcid.org/0000-0001-5173-2701
Jeffrey R CurrierViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA.

Funding

Statistics and Data Management P20GM104317 · NIGMS · UNIVERSITY OF RHODE ISLAND · PI MICHELOW, IAN · 2013 to 2017
$9.8M
NIGMS NIH HHS P20 GM104317
6 · The paper itself

Abstract

Generating effective and durable T cell immunity is a critical prerequisite for vaccination against dengue virus (DENV) and other viral diseases. However, understanding the molecular mechanisms of vaccine-elicited T cell immunity remains a critical knowledge gap in vaccinology. In this study, we utilize single-cell RNA sequencing (scRNAseq) and longitudinal TCR clonotype analysis to identify a unique transcriptional signature present in acutely activated and clonally-expanded T cells that become committed to the memory repertoire. This effector/memory-associated transcriptional signature is dominated by a robust metabolic transcriptional program. Based on this transcriptional signature, we are able to define a set of markers that identify the most durable vaccine-reactive memory-precursor CD8

Indexed as

CD8-Positive T-LymphocytesDengue VaccinesGene Expression ProfilingHumansImmunity, CellularImmunogenicity, VaccineImmunologic MemoryMetabolomeReceptors, Antigen, T-CellSequence Analysis, RNASingle-Cell AnalysisTranscriptomeVaccines, AttenuatedDengue VaccinesReceptors, Antigen, T-CellVaccines, Attenuated

Identifiers

PMID31413301
PMCPMC6694189

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.