Evidence map›Paper›PMID 31413226›Full record

ArticleMicrobes and environments2019

Geochemical and Metagenomic Characterization of Jinata Onsen, a Proterozoic-Analog Hot Spring, Reveals Novel Microbial Diversity including Iron-Tolerant Phototrophs and Thermophilic Lithotrophs.

Lewis M Ward, Airi Idei, Mayuko Nakagawa, Yuichiro Ueno, Woodward W Fischer, Shawn E McGlynn

Abstract read
In one paragraph

Article in Microbes and environments, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
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  7. TheFrontiers in microbiology · 2025
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  11. The biotechnological potential of theApplied and environmental microbiology · 2024
    Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lewis M WardDepartment of Earth and Planetary Sciences, Harvard University.
Airi IdeiDepartment of Biological Sciences, Tokyo Metropolitan University.
Mayuko NakagawaEarth-Life Science Institute, Tokyo Institute of Technology.
Yuichiro UenoEarth-Life Science Institute, Tokyo Institute of Technology.
Woodward W FischerDivision of Geological and Planetary Sciences, California Institute of Technology.
Shawn E McGlynnEarth-Life Science Institute, Tokyo Institute of Technology.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydrothermal systems, including terrestrial hot springs, contain diverse geochemical conditions that vary over short spatial scales due to progressive interactions between reducing hydrothermal fluids, the oxygenated atmosphere, and, in some cases, seawater. At Jinata Onsen on Shikinejima Island, Japan, an intertidal, anoxic, iron-rich hot spring mixes with the oxygenated atmosphere and seawater over short spatial scales, creating diverse chemical potentials and redox pairs over a distance of ~10 m. We characterized geochemical conditions along the outflow of Jinata Onsen as well as the microbial communities present in biofilms, mats, and mineral crusts along its traverse using 16S rRNA gene amplicon and genome-resolved shotgun metagenomic sequencing. Microbial communities significantly changed downstream as temperatures and dissolved iron concentrations decreased and dissolved oxygen increased. Biomass was more limited near the spring source than downstream, and primary productivity appeared to be fueled by the oxidation of ferrous iron and molecular hydrogen by members of Zetaproteobacteria and Aquificae. The microbial community downstream was dominated by oxygenic Cyanobacteria. Cyanobacteria are abundant and active even at ferrous iron concentrations of ~150 μM, which challenges the idea that iron toxicity limited cyanobacterial expansion in Precambrian oceans. Several novel lineages of Bacteria are also present at Jinata Onsen, including previously uncharacterized members of the phyla Chloroflexi and Calditrichaeota, positioning Jinata Onsen as a valuable site for the future characterization of these clades.

Indexed as

BiodiversityBacteriaBiomassChemoautotrophic GrowthGeographyHot SpringsIronMetagenomicsMicrobiotaOxygenPhototrophic ProcessesPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNATemperatureIronOxygenRNA, Ribosomal, 16SastrobiologyferruginousgeomicrobiologymicroaerobicProterozoicthermophiles

Identifiers

PMID31413226
PMCPMC6759342

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.