Evidence map›Paper›PMID 31413137›Full record

ArticleJournal of virology2019

Genome-Wide Analysis of Heterogeneous Nuclear Ribonucleoprotein (hnRNP) Binding to HIV-1 RNA Reveals a Key Role for hnRNP H1 in Alternative Viral mRNA Splicing.

Sebla B Kutluay, Ann Emery, Srinivasa R Penumutchu, Dana Townsend, Kasyap Tenneti, Michaela K Madison, Amanda M Stukenbroeker, Chelsea Powell, David Jannain, Blanton S Tolbert and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. The biased adenosine-rich content of the HIV-1 genome serves as a molecular signature that facilitates efficient packaging.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  12. Salivary Biomarkers to Differentiate betweenDiagnostics (Basel, Switzerland) · 2023
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  18. Synthetic lethality-based prediction of anti-SARS-CoV-2 targets.bioRxiv : the preprint server for biology · 2021
    Article
  19. Article
  20. ESCO2 promotes lung adenocarcinoma progression by regulating hnRNPA1 acetylation.Journal of experimental & clinical cancer research : CR · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Sebla B KutluayDepartment of Molecular Microbiology, Washington University School of Medicine, Saint Louis, Missouri, USA kutluay@wustl.edu pbieniasz@rockefeller.edu.
Ann EmeryLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Srinivasa R PenumutchuDepartment of Chemistry, Case Western Reserve University, Cleveland, Ohio, USA.
Dana TownsendDepartment of Molecular Microbiology, Washington University School of Medicine, Saint Louis, Missouri, USA.
Kasyap TennetiDepartment of Molecular Microbiology, Washington University School of Medicine, Saint Louis, Missouri, USA.
Michaela K MadisonDepartment of Molecular Microbiology, Washington University School of Medicine, Saint Louis, Missouri, USA.
Amanda M StukenbroekerDepartment of Molecular Microbiology, Washington University School of Medicine, Saint Louis, Missouri, USA.
Chelsea PowellLaboratory of Retrovirology, The Rockefeller University, New York, New York, USA.
David JannainLaboratory of Retrovirology, The Rockefeller University, New York, New York, USA.
Blanton S TolbertDepartment of Chemistry, Case Western Reserve University, Cleveland, Ohio, USA.
Ronald I SwanstromLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Paul D BieniaszLaboratory of Retrovirology, The Rockefeller University, New York, New York, USA kutluay@wustl.edu pbieniasz@rockefeller.edu.
Washington University in St. Louis · USCase Western Reserve University · USRockefeller University · USUniversity of North Carolina at Chapel Hill · USHoward Hughes Medical Institute · US

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAYIE, KWAKU · 2012 to 2016
$21.7M
The Center for HIV RNA Studies (CRNA)U54GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TELESNITSKY, ALICE · 2017 to 2018
$10.2M
RNA Protein interactions in HIV-1 replicationR01AI050111 · NIAID · ROCKEFELLER UNIVERSITY · PI BIENIASZ, PAUL D. · 2001 to 2021
$7.9M
STRUCTURAL BIOPHYSICS OF HIV ALTERNATIVE SPLICINGR01GM101979 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI TOLBERT, BLANTON SMITH · 2012 to 2016
$1.6M
Identification of novel protein-RNA interactions during HIV-1 particle genesisK22AI116258 · NIAID · WASHINGTON UNIVERSITY · PI KUTLUAY, SEBLA B. · 2015 to 2016
$270k
Quantification of HIV-1 Splicing Phenotypes and the Role of RNA Structure and Splice Regulator ElementsF31AI116406 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI EMERY, ANN L · 2015 to 2017
$93k
NIAID NIH HHS F31 AI116406NIAID NIH HHS K22 AI116258NIAID NIH HHS P30 AI050410NIAID NIH HHS R01 AI050111NIGMS NIH HHS P50 GM103297NIGMS NIH HHS R01 GM101979NIGMS NIH HHS U54 GM103297
6 · The paper itself

Abstract

Alternative splicing of HIV-1 mRNAs increases viral coding potential and controls the levels and timing of gene expression. HIV-1 splicing is regulated in part by heterogeneous nuclear ribonucleoproteins (hnRNPs) and their viral target sequences, which typically repress splicing when studied outside their native viral context. Here, we determined the location and extent of hnRNP binding to HIV-1 mRNAs and their impact on splicing in a native viral context. Notably, hnRNP A1, hnRNP A2, and hnRNP B1 bound to many dispersed sites across viral mRNAs. Conversely, hnRNP H1 bound to a few discrete purine-rich sequences, a finding that was mirrored

Indexed as

Alternative SplicingGene Expression Regulation, ViralBinding SitesHeterogeneous-Nuclear Ribonucleoprotein Group F-HHIV-1HumansProtein ConformationRegulatory Sequences, Nucleic AcidRNA, MessengerRNA PrecursorsRNA, Viralvif Gene Products, Human Immunodeficiency VirusHeterogeneous-Nuclear Ribonucleoprotein Group F-HRNA, MessengerRNA PrecursorsRNA, Viralvif Gene Products, Human Immunodeficiency Virusvif protein, Human immunodeficiency virus 1HIV-1hnRNPsplicing

Identifiers

PMID31413137
PMCPMC6803249
OpenAlexW2967902434

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.