ArticleMicrobiome2019
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
Article in Microbiome, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.
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Who cites it
76 citing papers in PubMed.
- Nanopore sequencing reveals coordinated host and microbiome responses across barley genotypes.BMC biology · 2026Article
- Evaluating the legacy of drought exposure on root and rhizosphere bacterial microbiomes over two plant generations.Microbiology spectrum · 2026Article
- Deciphering biochar-PGPR-plant synergies for sustainable soil rhizoremediation of organic pollutants.Archives of microbiology · 2026Review
- Unraveling fitness landscapes in plant-associated Bacteroidota.ISME communications · 2026Article
- The combined influence of microbiome and soil environment contributes to the chemotype differentiation iniMetaOmics · 2025Article
- Exploring the Bacterial Microbiota of Seeds.Microbial biotechnology · 2025Review
- The role of plant host genetics in shaping the composition and functionality of rhizosphere microbiomes.mSystems · 2025Review
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- Genetic Diversification of Tomato and Agricultural Soil Management Shaped the Rhizospheric Microbiome of Tomato (Microorganisms · 2025Article
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- Influence of genotype, nodule position, and edaphic factors on microbial diversity and assembly of pigeonpea (Cajanus cajan) root nodules in Indian soils.Environmental microbiome · 2025Article
- Fermentative profile and bacterial community structure of whole-plant triticale silage (mSphere · 2025Article
- Comparison of Rhizosphere Microbiomes Between Domesticated and Wild Wheat in a Typical Agricultural Field: Insights into Microbial Community Structure and Functional Shifts.Journal of fungi (Basel, Switzerland) · 2025Article
- Native edaphoclimatic regions shape soil communities of crop wild progenitors.ISME communications · 2025Article
- Changes in soil microbial community structure during the transformation from native soil to alfalfa cultivation soil in the Kunlun Mountain sand area, Xinjiang, China.Frontiers in microbiology · 2025Article
- Article
- Metagenomic insights into short-term legume rotation: modulating potato rhizosphere microbiota to enhance tuber yield and quality.Frontiers in microbiology · 2025Article
- The rhizosphere of Phaseolus vulgaris L. cultivars hosts a similar bacterial community in local agricultural soils.PloS one · 2025Article
- Article
- Community standards and future opportunities for synthetic communities in plant-microbiota research.Nature microbiology · 2024Review
16 more citing papers are in PubMed but not listed here.
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundModern crop varieties are typically cultivated in agriculturally well-managed soils far from the centers of origin of their wild relatives. How this habitat expansion impacted plant microbiome assembly is not well understood.
resultsHere, we investigated if the transition from a native to an agricultural soil affected rhizobacterial community assembly of wild and modern common bean (Phaseolus vulgaris) and if this led to a depletion of rhizobacterial diversity. The impact of the bean genotype on rhizobacterial assembly was more prominent in the agricultural soil than in the native soil. Although only 113 operational taxonomic units (OTUs) out of a total of 15,925 were shared by all eight bean accessions grown in native and agricultural soils, this core microbiome represented a large fraction (25.9%) of all sequence reads. More OTUs were exclusively found in the rhizosphere of common bean in the agricultural soil as compared to the native soil and in the rhizosphere of modern bean accessions as compared to wild accessions. Co-occurrence analyses further showed a reduction in complexity of the interactions in the bean rhizosphere microbiome in the agricultural soil as compared to the native soil.
conclusionsCollectively, these results suggest that habitat expansion of common bean from its native soil environment to an agricultural context had an unexpected overall positive effect on rhizobacterial diversity and led to a stronger bean genotype-dependent effect on rhizosphere microbiome assembly.
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